BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0275800 Os06g0275800|AK120497
(448 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0275800 Amino acid/polyamine transporter II family pro... 777 0.0
Os02g0727100 Amino acid/polyamine transporter II family pro... 568 e-162
Os06g0633800 Amino acid/polyamine transporter II family pro... 523 e-149
Os02g0191300 Similar to Amino acid transporter-like protein 523 e-148
Os01g0825800 Amino acid/polyamine transporter II family pro... 383 e-106
Os06g0644700 Amino acid/polyamine transporter II family pro... 279 2e-75
Os09g0432800 191 1e-48
Os07g0598600 125 9e-29
>Os06g0275800 Amino acid/polyamine transporter II family protein
Length = 448
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/448 (89%), Positives = 401/448 (89%)
Query: 1 MGGGVTERLPEGSSEPLLPTKREXXXXXXEFAGAVFNLSTTIVGAGIMALPATMKVLGLA 60
MGGGVTERLPEGSSEPLLPTKRE EFAGAVFNLSTTIVGAGIMALPATMKVLGLA
Sbjct: 1 MGGGVTERLPEGSSEPLLPTKREGGGGGGEFAGAVFNLSTTIVGAGIMALPATMKVLGLA 60
Query: 61 PGLVAILLAALLTDASIELLVRSSRAAGAPSYGAVMGDAFGWWGRRLLQVCXXXXXXXXX 120
PGLVAILLAALLTDASIELLVRSSRAAGAPSYGAVMGDAFGWWGRRLLQVC
Sbjct: 61 PGLVAILLAALLTDASIELLVRSSRAAGAPSYGAVMGDAFGWWGRRLLQVCVVVNNIGVM 120
Query: 121 XXXXXXXXDVLSGTSSGGEHHYGVLEGWFGPQWWNGRXXXXXXXXXXXXXPLACLKRVDS 180
DVLSGTSSGGEHHYGVLEGWFGPQWWNGR PLACLKRVDS
Sbjct: 121 IVYMIIIGDVLSGTSSGGEHHYGVLEGWFGPQWWNGRFFVLLVTTLVVFTPLACLKRVDS 180
Query: 181 LSYTSAISVALAVVFVIITAGIAIVKLIKGQIPMPKLFPDVPDLASIWELFTAVPVLVTA 240
LSYTSAISVALAVVFVIITAGIAIVKLIKGQIPMPKLFPDVPDLASIWELFTAVPVLVTA
Sbjct: 181 LSYTSAISVALAVVFVIITAGIAIVKLIKGQIPMPKLFPDVPDLASIWELFTAVPVLVTA 240
Query: 241 YVCHYNVHPIHNELKDPSQIKPIVHTSLVLCSTVYITTSFFGYLLFGESTLSDVLANFDS 300
YVCHYNVHPIHNELKDPSQIKPIVHTSLVLCSTVYITTSFFGYLLFGESTLSDVLANFDS
Sbjct: 241 YVCHYNVHPIHNELKDPSQIKPIVHTSLVLCSTVYITTSFFGYLLFGESTLSDVLANFDS 300
Query: 301 NLGIPYSQMLNDAVRVSYAVHLMLVFPMIFHALRLNLDGXXXXXXXXXXXDNRRFSVMTA 360
NLGIPYSQMLNDAVRVSYAVHLMLVFPMIFHALRLNLDG DNRRFSVMTA
Sbjct: 301 NLGIPYSQMLNDAVRVSYAVHLMLVFPMIFHALRLNLDGLLFSSSSPLSSDNRRFSVMTA 360
Query: 361 VLLLVIFLSANFIPSIWDAFQFTGATAAVCIAFIFPAAITLRDPHSIAKKWDKILSIFMI 420
VLLLVIFLSANFIPSIWDAFQFTGATAAVCIAFIFPAAITLRDPHSIAKKWDKILSIFMI
Sbjct: 361 VLLLVIFLSANFIPSIWDAFQFTGATAAVCIAFIFPAAITLRDPHSIAKKWDKILSIFMI 420
Query: 421 VLAIVSNVVAVYSDAYSMFHRKSSPSIA 448
VLAIVSNVVAVYSDAYSMFHRKSSPSIA
Sbjct: 421 VLAIVSNVVAVYSDAYSMFHRKSSPSIA 448
>Os02g0727100 Amino acid/polyamine transporter II family protein
Length = 448
Score = 568 bits (1465), Expect = e-162, Method: Compositional matrix adjust.
Identities = 289/439 (65%), Positives = 329/439 (74%), Gaps = 12/439 (2%)
Query: 9 LPEGSSEPLLPTKREX-----------XXXXXEFAGAVFNLSTTIVGAGIMALPATMKVL 57
+P SEPLLP K+ F+GAVFNLSTTIVGAGIMALPATMKVL
Sbjct: 5 MPTEGSEPLLPRKQRDGGDDGAASSHDHFDGASFSGAVFNLSTTIVGAGIMALPATMKVL 64
Query: 58 GLAPGLVAILLAALLTDASIELLVRSSRAAGAPSYGAVMGDAFGWWGRRLLQVCXXXXXX 117
GL PGL+ ++LAA+LTDASIELLVR SRA GA SYG MGDAFG +GR LLQ+C
Sbjct: 65 GLVPGLILVMLAAVLTDASIELLVRFSRAVGATSYGEAMGDAFGAFGRGLLQLCVVVNNV 124
Query: 118 XXXXXXXXXXXDVLSG-TSSGGEHHYGVLEGWFGPQWWNGRXXXXXXXXXXXXXPLACLK 176
DVLSG +SSGG HH+GV+EGWFGP WNGR PL C K
Sbjct: 125 GVMVVYMIIIGDVLSGKSSSGGVHHHGVIEGWFGPNRWNGRFSILVIVTLGVFTPLTCFK 184
Query: 177 RVDSLSYTSAISVALAVVFVIITAGIAIVKLIKGQIPMPKLFPDVPDLASIWELFTAVPV 236
RVDSL YTSA+SVALAVVFV+ITAGI +KL++GQIPMPKLFPDV D +S W LFTA PV
Sbjct: 185 RVDSLKYTSALSVALAVVFVVITAGITTIKLMRGQIPMPKLFPDVHDWSSTWRLFTAAPV 244
Query: 237 LVTAYVCHYNVHPIHNELKDPSQIKPIVHTSLVLCSTVYITTSFFGYLLFGESTLSDVLA 296
LVTAY+CHYNVHPIHNELKD SQI+PIV SL+LC VY TTSFFG+LLFGE+TL DVLA
Sbjct: 245 LVTAYICHYNVHPIHNELKDHSQIRPIVRASLLLCLAVYTTTSFFGFLLFGEATLDDVLA 304
Query: 297 NFDSNLGIPYSQMLNDAVRVSYAVHLMLVFPMIFHALRLNLDGXXXXXXXXXXXDNRRFS 356
NFDS+LGIPYS +L+DAVRVSY +HLMLVFP++FHALR N+DG DNRRF
Sbjct: 305 NFDSDLGIPYSLVLDDAVRVSYVLHLMLVFPIVFHALRFNMDGLLFPSARPLSSDNRRFG 364
Query: 357 VMTAVLLLVIFLSANFIPSIWDAFQFTGATAAVCIAFIFPAAITLRDPHSIAKKWDKILS 416
+TA LL VIFL+ANF+P+IWDAFQFTGATAAV IA+IFPA + LRD H IA K DK L+
Sbjct: 365 AITAALLTVIFLAANFVPNIWDAFQFTGATAAVAIAYIFPAGMALRDRHGIATKGDKYLA 424
Query: 417 IFMIVLAIVSNVVAVYSDA 435
+FMIVLA+V+N VAVYSDA
Sbjct: 425 VFMIVLALVANGVAVYSDA 443
>Os06g0633800 Amino acid/polyamine transporter II family protein
Length = 458
Score = 523 bits (1348), Expect = e-149, Method: Compositional matrix adjust.
Identities = 266/456 (58%), Positives = 322/456 (70%), Gaps = 15/456 (3%)
Query: 4 GVTERLPEGSSE-----------PLLPTKREXX----XXXXEFAGAVFNLSTTIVGAGIM 48
G++ P GS + PLLP K E F+GAVFNLSTTIVGAGIM
Sbjct: 2 GISSESPNGSQQIVQKETRDETTPLLPVKVEEEGFHEFNGASFSGAVFNLSTTIVGAGIM 61
Query: 49 ALPATMKVLGLAPGLVAILLAALLTDASIELLVRSSRAAGAPSYGAVMGDAFGWWGRRLL 108
ALPA++K+LG+ PG++ I++ ALLT+ASI++LVR S SYG +MG+A+G WGR L
Sbjct: 62 ALPASIKMLGIIPGILMIIVVALLTEASIDMLVRCSHQGKITSYGWLMGEAYGQWGRIAL 121
Query: 109 QVCXXXXXXXXXXXXXXXXXDVLSGTSSGGEHHYGVLEGWFGPQWWNGRXXXXXXXXXXX 168
Q DVLSGTSS G HH G+LEGWFG WN R
Sbjct: 122 QASVVINNIGVMIVYMIIIGDVLSGTSSTGVHHRGILEGWFGAHLWNSRAIVLLATTLFV 181
Query: 169 XXPLACLKRVDSLSYTSAISVALAVVFVIITAGIAIVKLIKGQIPMPKLFPDVPDLASIW 228
PL KR+DSL YTSA+SVALAVVFV+ITAGIAI+KL G + MPKLFP++ L+SIW
Sbjct: 182 FAPLVSFKRLDSLRYTSALSVALAVVFVVITAGIAIIKLFNGTVAMPKLFPELDGLSSIW 241
Query: 229 ELFTAVPVLVTAYVCHYNVHPIHNELKDPSQIKPIVHTSLVLCSTVYITTSFFGYLLFGE 288
+LFTAVPVLVTAY+CHYNVH I NEL+D +QIKPIV TSL LCS+VYI TSFF YLLFGE
Sbjct: 242 KLFTAVPVLVTAYICHYNVHSIDNELEDRTQIKPIVRTSLFLCSSVYIATSFFAYLLFGE 301
Query: 289 STLSDVLANFDSNLGIPYSQMLNDAVRVSYAVHLMLVFPMIFHALRLNLDGXXXXXXXXX 348
TL DVLANFD+NLGIP+S + +D VRVSYA H+MLVFP++F ALRLNLDG
Sbjct: 302 GTLDDVLANFDANLGIPFSSVFDDIVRVSYAAHVMLVFPIVFFALRLNLDGLLFPTSRHI 361
Query: 349 XXDNRRFSVMTAVLLLVIFLSANFIPSIWDAFQFTGATAAVCIAFIFPAAITLRDPHSIA 408
DN+RF+++T LL VI+L+A FIPSIWDAFQFTGATAAV I FIFPA + LRDP+ IA
Sbjct: 362 SRDNKRFAIITISLLTVIYLAAIFIPSIWDAFQFTGATAAVLIGFIFPAMVILRDPYGIA 421
Query: 409 KKWDKILSIFMIVLAIVSNVVAVYSDAYSMFHRKSS 444
K DKIL++ MIVLA++SN VA+YSDA ++F ++
Sbjct: 422 SKRDKILAVTMIVLAVLSNSVALYSDAMNIFRKEEE 457
>Os02g0191300 Similar to Amino acid transporter-like protein
Length = 459
Score = 523 bits (1346), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/443 (60%), Positives = 318/443 (71%), Gaps = 5/443 (1%)
Query: 5 VTERLPEGSSEPLLPTKREXXXXX----XEFAGAVFNLSTTIVGAGIMALPATMKVLGLA 60
V+ + + PLLP K E F+GAVFNLSTTIVGAGIMALPA++K+LG+
Sbjct: 14 VSHKEIRDETTPLLPIKEEEEGIHEFNGASFSGAVFNLSTTIVGAGIMALPASIKMLGII 73
Query: 61 PGLVAILLAALLTDASIELLVRSSRAAGAPSYGAVMGDAFGWWGRRLLQVCXXXXXXXXX 120
PG++ I+L ALLT+ASI++LVR S SYG +MG+ FG WGR LQ
Sbjct: 74 PGILMIILVALLTEASIDMLVRCSHEGKITSYGWLMGETFGQWGRIALQASVVINNIGMM 133
Query: 121 XXXXXXXXDVLSGTSSGGEHHYGVLEGWFGPQWWNGRXXXXXXXXXXXXXPLACLKRVDS 180
DVLSGTS+ G HH G+ EGWFGP WN R PL KR+DS
Sbjct: 134 IVYMIIVGDVLSGTSTSGVHHRGIFEGWFGPHLWNSRPVVLLATTLFVFGPLVSFKRLDS 193
Query: 181 LSYTSAISVALAVVFVIITAGIAIVKLIKGQIPMPKLFPDVPDLASIWELFTAVPVLVTA 240
L YTSA+SVALAVVFV+ITAGIAIV+LI+G + +PKLFP++ SIWELFTAVPV+VTA
Sbjct: 194 LRYTSALSVALAVVFVVITAGIAIVRLIEGTVEIPKLFPELDGTNSIWELFTAVPVVVTA 253
Query: 241 YVCHYNVHPIHNELKDPSQIKPIVHTSLVLCSTVYITTSFFGYLLFGESTLSDVLANFDS 300
Y+CHYNVH I NEL+D +Q KPIV TSL LCS+VYI TSFF YLLFGE TL+DVLANFDS
Sbjct: 254 YICHYNVHSIDNELEDRTQTKPIVQTSLALCSSVYIATSFFAYLLFGEGTLADVLANFDS 313
Query: 301 NLGIPYSQMLNDAVRVSYAVHLMLVFPMIFHALRLNLDGXXXXXXXXXXXDNRRFSVMTA 360
NL IP+S + ND VRVSY VH+MLVFP++F ALRLNLDG DNRRF+++T
Sbjct: 314 NLHIPFSSVFNDVVRVSYVVHIMLVFPIVFFALRLNLDGLLFPTARHISRDNRRFAIITG 373
Query: 361 VLLLVIFLSANFIPSIWDAFQFTGATAAVCIAFIFPAAITLRDPHSIAKKWDKILSIFMI 420
LL VI+L+A FIPSIWDAFQFTGATAAV I FIFPA I LRDP+ IA K DKIL++ MI
Sbjct: 374 SLLAVIYLAAIFIPSIWDAFQFTGATAAVLIGFIFPAMIILRDPYGIATKRDKILALTMI 433
Query: 421 VLAIVSNVVAVYSDAYS-MFHRK 442
VLA++SN VA+YSDA + +FHRK
Sbjct: 434 VLAVLSNSVALYSDALNIIFHRK 456
>Os01g0825800 Amino acid/polyamine transporter II family protein
Length = 456
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/430 (46%), Positives = 269/430 (62%), Gaps = 2/430 (0%)
Query: 14 SEPLLPTKREXXXXXXEFAGAVFNLSTTIVGAGIMALPATMKVLGLAPGLVAILLAALLT 73
EPLLP + +GAVFN+ST+I+GAGIM++PA M+VLG+ P L+ I A L+
Sbjct: 19 EEPLLP-EFSGGGHGASVSGAVFNVSTSIIGAGIMSIPAAMRVLGVLPALLLIATVAALS 77
Query: 74 DASIELLVRSSR-AAGAPSYGAVMGDAFGWWGRRLLQVCXXXXXXXXXXXXXXXXXDVLS 132
DAS+E ++R + +G PSY +MGDAFG G + L VC DVLS
Sbjct: 78 DASVEFMLRYTGWDSGPPSYAGIMGDAFGRAGAKALNVCIAFTTTGTLVVYLIIIGDVLS 137
Query: 133 GTSSGGEHHYGVLEGWFGPQWWNGRXXXXXXXXXXXXXPLACLKRVDSLSYTSAISVALA 192
G++ G+ H GVL+ FG QWW R PL +RVDSL +TSA+S+ LA
Sbjct: 138 GSAGAGDEHAGVLQELFGAQWWTARELVILVTAIVVLLPLVLRRRVDSLKFTSAVSILLA 197
Query: 193 VVFVIITAGIAIVKLIKGQIPMPKLFPDVPDLASIWELFTAVPVLVTAYVCHYNVHPIHN 252
VVF+ I+ GIA+ L G MP++ PD L+S +ELFTAVP++V A+ H+NVHPI
Sbjct: 198 VVFMFISLGIAVYALFTGTAKMPRMLPDFSRLSSPFELFTAVPIVVVAFTFHFNVHPIRT 257
Query: 253 ELKDPSQIKPIVHTSLVLCSTVYITTSFFGYLLFGESTLSDVLANFDSNLGIPYSQMLND 312
EL S +K V SLVLC+ +Y FFG+LLFG++T++DVLANFD + G Q LND
Sbjct: 258 ELSKTSDMKAAVRISLVLCAAIYAAVGFFGFLLFGDATMADVLANFDRSSGAGVPQALND 317
Query: 313 AVRVSYAVHLMLVFPMIFHALRLNLDGXXXXXXXXXXXDNRRFSVMTAVLLLVIFLSANF 372
A R+SYA+HL+LVFP++ +LR+N+D D RRF +TAVL+ V++ A
Sbjct: 318 AARLSYALHLVLVFPLLHFSLRVNVDELLFPGRRPLATDTRRFVALTAVLMAVLYALAIA 377
Query: 373 IPSIWDAFQFTGATAAVCIAFIFPAAITLRDPHSIAKKWDKILSIFMIVLAIVSNVVAVY 432
IPSIW F+++G+T AVCI+ IFP AI LRD H IAK DK L+ MI LA++++ +A+
Sbjct: 378 IPSIWTLFEYSGSTFAVCISLIFPGAIVLRDAHGIAKTKDKALAATMIALAVITSSIAIA 437
Query: 433 SDAYSMFHRK 442
S+ S K
Sbjct: 438 SNVMSSISGK 447
>Os06g0644700 Amino acid/polyamine transporter II family protein
Length = 477
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 180/438 (41%), Positives = 259/438 (59%), Gaps = 26/438 (5%)
Query: 10 PEGSSEPLLPTKREXXXXXXEFAGAVFNLSTTIVGAGIMALPATMKVLGLAPGLVAILLA 69
PEGS P AVFNL+T+I+GAGIMALPATMKVLG+A GLV+IL+
Sbjct: 62 PEGSGVP----------------AAVFNLATSIIGAGIMALPATMKVLGVAVGLVSILVM 105
Query: 70 ALLTDASIELLVRSSRAAGAPSYGAVMGDAFGWWGRRLLQVCXXXXXXXXXXXXXXXXXD 129
+L++ +IELLVR + A SYG V+ A G + Q+C D
Sbjct: 106 GILSEVTIELLVRFAVYCRALSYGEVVHKALGRPASIVAQMCVIINNAGVLIVYLIIIGD 165
Query: 130 VLSGTSSGGEHHYGVLEGWFGPQWWNGRXXXXXXXXXXXXXPLACLKRVDSLSYTSAISV 189
V+SG+ H GV++ G W+ R PL L+++DSLS +SA SV
Sbjct: 166 VMSGSLK----HIGVMDQLIGHGEWDNRRLLILVVLVIFLSPLCALEKIDSLSLSSAASV 221
Query: 190 ALAVVFVIITAGIAIVKLIKGQIPMPKLFPDVPDLASIWELFTAVPVLVTAYVCHYNVHP 249
ALAVVFV+++ IA+VK+++G+I MP++ PD A++ +L +P++ AY+CH+NV P
Sbjct: 222 ALAVVFVVVSCIIALVKVVEGKISMPRMGPDFSSRAAMLDLLVVIPIMTNAYICHFNVQP 281
Query: 250 IHNELKD--PSQIKPIVHTSLVLCSTVYITTSFFGYLLFGESTLSDVLANFDSNLGIPYS 307
I+NELK+ P + I + VLC VY T+ GYLLFGE T SDVL NFD +LGI +S
Sbjct: 282 IYNELKEKTPHNMYKIGRITTVLCVVVYALTAVSGYLLFGEDTESDVLTNFDKDLGIRFS 341
Query: 308 QMLNDAVRVSYAVHLMLVFPMIFHALRLNLDGXXXXXXXXXXXDNRRFSVMTAVLLLVIF 367
+LN VR+ Y +HL+LVFP++ +LR +D ++ +T VLL +I+
Sbjct: 342 SILNFIVRIGYVIHLVLVFPVVHFSLRQTVD--SLIFGELAPHSRKKMLTLTVVLLALIY 399
Query: 368 LSANFIPSIWDAFQFTGATAAVCIAFIFPAAITLR-DPHSIA-KKWDKILSIFMIVLAIV 425
L + IP+IW AF+FTGAT + + FIFPA I LR D + K +++LSI M+ LA+V
Sbjct: 400 LGSTMIPNIWVAFKFTGATTGLALGFIFPALIALRLDKEGKSLGKGERLLSIVMLGLAMV 459
Query: 426 SNVVAVYSDAYSMFHRKS 443
+++ V + YS+ + +
Sbjct: 460 VSIIGVIGNVYSLRSKSA 477
>Os09g0432800
Length = 308
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/208 (51%), Positives = 126/208 (60%), Gaps = 45/208 (21%)
Query: 179 DSLSYTSAISVALAVVFVIITAGIAIVKLIKGQIPMPKLFPDVPDLASIWELFTAVPVLV 238
D L YT A+SVALAVVFV+IT GIA +KL+KGQIPMPKLFPDV D +S W L TA PVL
Sbjct: 54 DPLKYTPAVSVALAVVFVVITVGIATIKLMKGQIPMPKLFPDVHDWSSTWRLPTAAPVL- 112
Query: 239 TAYVCHYNVHPIHNELKDPSQIKPIVHTSLVLCSTVYITTSFFGYLLFGESTLSDVLANF 298
LKD S I+PIV SL+L VY TTSFFG+LLFGE+TL D
Sbjct: 113 ---------------LKDHSLIRPIVRASLLLGLVVYTTTSFFGFLLFGEATLDD----- 152
Query: 299 DSNLGIPYSQMLNDAVRVSYAVHLMLVFPMIFHALRLNLDGXXXXXXXXXXXDNRRFSVM 358
MLVFP++F ALR N+DG DNRRF +
Sbjct: 153 ------------------------MLVFPIVFRALRFNMDGLLFPSARPFSCDNRRFGAI 188
Query: 359 TAVLLLVIFLSANFIPSIWDAFQFTGAT 386
TA LL VIFL+ANF+P+IWDAFQFTG++
Sbjct: 189 TAELLTVIFLAANFVPNIWDAFQFTGSS 216
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 44/53 (83%)
Query: 48 MALPATMKVLGLAPGLVAILLAALLTDASIELLVRSSRAAGAPSYGAVMGDAF 100
MALPATMKVL L PGL+ ++LAA+LTDASIELLV SRA GA SYG MGDAF
Sbjct: 1 MALPATMKVLSLVPGLILVMLAAVLTDASIELLVWFSRAVGATSYGEAMGDAF 53
>Os07g0598600
Length = 272
Score = 125 bits (313), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 111/212 (52%), Gaps = 32/212 (15%)
Query: 179 DSLSYTSAISVALAVVFVIITAGIAIVKLIKGQIPMPKLFPDVPDLASIWELFTAVPVLV 238
D L YT A+SVALA+VFV+I GIA +KL++GQIPMPKLFPDV D +S W L TA PVLV
Sbjct: 54 DPLKYTPAVSVALAIVFVVINVGIATIKLMRGQIPMPKLFPDVHDWSSTWRLHTAAPVLV 113
Query: 239 TAYVCHYNVHPIHNELKD----PSQIKPIVHTSLVLCSTVYITTSFFGYLLFGESTLSDV 294
+ H + HN + P Q ++ +T + G + +
Sbjct: 114 SCDRLHLPLQRAHNSQRAQGPLPDQ-----------ANSAGVTAALLGRVHHHQLLRLPP 162
Query: 295 LANFDSNLGIPYSQMLNDAVRVSYAVHLMLVFPMIFHALRLNLDGXXXXXXXXXXXDNRR 354
L D+ ++++ + R + H P+ L L G DNRR
Sbjct: 163 LRRGDAGR---HARLPHRVPRAAIQ-HGRPPLPLSEAPL---LRG----------CDNRR 205
Query: 355 FSVMTAVLLLVIFLSANFIPSIWDAFQFTGAT 386
F +TA LL VIFL+ANF P+IWDAFQFTG++
Sbjct: 206 FGAITAALLTVIFLAANFDPNIWDAFQFTGSS 237
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 44/53 (83%)
Query: 48 MALPATMKVLGLAPGLVAILLAALLTDASIELLVRSSRAAGAPSYGAVMGDAF 100
MALPATMKVL L GL+ ++LAA+LTDASIELLV+ SRA GA SYG MGDAF
Sbjct: 1 MALPATMKVLSLVLGLILVMLAAVLTDASIELLVQFSRAVGATSYGEAMGDAF 53
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.139 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,807,171
Number of extensions: 453914
Number of successful extensions: 1363
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1356
Number of HSP's successfully gapped: 11
Length of query: 448
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 344
Effective length of database: 11,605,545
Effective search space: 3992307480
Effective search space used: 3992307480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 158 (65.5 bits)