Os02g0191300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Amino acid transporter-like protein.
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Os02g0191300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Amino acid transporter-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 241.17 | 0.73 | 9.08 | -5.16 | 1.74 | -1.91 | -1.9 | -15 | -0.375 | 0.574 | 1.009 | 4440 | 18 | 11 |
| 317.22 | 0.83 | 9.18 | -4.38 | 1.49 | -1.97 | -1.89 | -- | -0.0187 | 0.415 | 0.6689 | 35133 | 18.1 | 11.2 |
| 238.47 | 0.719 | 9.02 | -5.26 | 1.84 | -1.71 | -- | -15 | -0.351 | 0.624 | 1.03 | 5237 | 18 | 11 |
| 317.78 | 0.83 | 9.18 | -3.53 | 1.67 | -1.97 | -- | -- | 0.0716 | 0.571 | 0.6601 | 35157 | 18.1 | 11.3 |
| 436.66 | 0.973 | 9.03 | -4.88 | -- | -1.18 | -- | -13 | -0.243 | -- | 1.04 | 5243 | 18 | 11 |
| 426.08 | 0.968 | 9.38 | -3.55 | 1.61 | -- | -2.23 | -- | -0.463 | 0.457 | -- | -- | -- | -- |
| 447.4 | 0.991 | 9.38 | -3.46 | 1.62 | -- | -- | -- | -0.452 | 0.442 | -- | -- | -- | -- |
| 481.7 | 1.02 | 9.32 | -3.83 | -- | -1.15 | -- | -- | -0.254 | -- | -25.22 | 4251 | 18.6 | 11.6 |
| 341.04 | 0.86 | 9.16 | -- | 1.82 | -3.01 | -- | -- | 0.626 | 0.199 | 0.3893 | 38847 | 19.6 | 11.5 |
| 612.09 | 1.16 | 9.35 | -3.41 | -- | -- | -- | -- | -0.425 | -- | -- | -- | -- | -- |
| 763.21 | 1.29 | 9.29 | -- | 1.57 | -- | -- | -- | -0.0663 | 0.33 | -- | -- | -- | -- |
| 460.82 | 1 | 9.16 | -- | -- | -2.98 | -- | -- | 0.691 | -- | 0.67 | 40990 | 21.3 | 11.5 |
| 918.13 | 1.41 | 9.26 | -- | -- | -- | -- | -- | -0.0473 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 236.11 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 10 | 238.45 | temperature | 25 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 30 | 240.91 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 42 | 241.87 | temperature | 25 | 14400 | > th | dose dependent | rect. | 23 | 17 |
| 83 | 243.04 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 94 | 243.38 | temperature | 25 | 14400 | > th | dose dependent | sin | 1 | NA |
| 126 | 244.19 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 16 |
| 157 | 244.70 | temperature | 25 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 168 | 244.84 | temperature | 25 | 14400 | > th | dose independent | rect. | 24 | 13 |
| 257 | 246.10 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 264 | 246.14 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 267 | 246.18 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 304 | 246.48 | temperature | 25 | 14400 | < th | dose independent | rect. | 24 | 13 |
| 326 | 246.98 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 349 | 247.21 | temperature | 25 | 14400 | > th | dose independent | rect. | 5 | 7 |
| 382 | 247.75 | temperature | 25 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 383 | 247.83 | temperature | 25 | 14400 | > th | dose independent | sin | 5 | NA |
| 403 | 248.21 | temperature | 25 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 415 | 248.48 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 444 | 248.89 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 445 | 248.89 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 455 | 249.07 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 468 | 249.33 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 20 |
| 478 | 249.40 | temperature | 25 | 14400 | < th | dose independent | sin | 5 | NA |
| 527 | 250.04 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 532 | 250.09 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 533 | 250.12 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 21 |
| 616 | 250.73 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 618 | 250.73 | temperature | 30 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 653 | 250.90 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 657 | 250.93 | temperature | 25 | 14400 | < th | dose independent | rect. | 23 | 20 |
| 700 | 251.29 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 716 | 251.39 | temperature | 20 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 780 | 251.79 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 785 | 251.81 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 20 |
| 786 | 251.82 | temperature | 25 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 806 | 251.96 | temperature | 25 | 14400 | > th | dose independent | no | NA | NA |
| 812 | 251.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 850 | 252.18 | temperature | 25 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 985 | 252.68 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 19 |
| 986 | 252.68 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 21 |