Os06g0644700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Amino acid/polyamine transporter II family protein.
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Os06g0644700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Amino acid/polyamine transporter II family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.22 | 0.319 | 9.46 | 1.37 | 0.302 | -0.601 | -1.12 | 0.792 | 0.751 | 5.94 | -1.699 | 1401 | -- | -- |
| 47.43 | 0.321 | 9.47 | 1.26 | 0.299 | -0.575 | -1.1 | -- | 0.718 | 5.99 | -0.001375 | 1401 | -- | -- |
| 48.18 | 0.323 | 9.45 | 1.33 | 0.334 | -0.651 | -- | 0.886 | 0.765 | 7.99 | 0.492 | 1533 | -- | -- |
| 49.45 | 0.328 | 9.46 | 1.25 | 0.316 | -0.619 | -- | -- | 0.724 | 7.88 | -18.28 | 1527 | -- | -- |
| 51.69 | 0.335 | 9.46 | 1.36 | -- | -0.743 | -- | 1.29 | 0.764 | -- | -7.107 | 2287 | -- | -- |
| 59.66 | 0.362 | 9.5 | 1.18 | 0.301 | -- | -1.09 | -- | 0.572 | 6.28 | -- | -- | -- | -- |
| 61.94 | 0.369 | 9.49 | 1.17 | 0.311 | -- | -- | -- | 0.578 | 7.56 | -- | -- | -- | -- |
| 52.94 | 0.339 | 9.48 | 1.27 | -- | -0.641 | -- | -- | 0.693 | -- | 0.5496 | 1039 | -- | -- |
| 89.89 | 0.442 | 9.49 | -- | 0.329 | -0.576 | -- | -- | 0.548 | 8.22 | 2.137 | 1637 | -- | -- |
| 67.13 | 0.383 | 9.5 | 1.17 | -- | -- | -- | -- | 0.582 | -- | -- | -- | -- | -- |
| 97.92 | 0.463 | 9.52 | -- | 0.322 | -- | -- | -- | 0.448 | 7.31 | -- | -- | -- | -- |
| 74.69 | 0.403 | 9.56 | -- | -- | -0.836 | -- | -- | 0.397 | -- | 56.18 | 23902 | -- | -- |
| 103.42 | 0.475 | 9.53 | -- | -- | -- | -- | -- | 0.452 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.09 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 2 | 45.22 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 21 |
| 6 | 45.45 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 15 | 45.68 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 18 | 45.73 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 17 |
| 26 | 45.77 | radiation | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 54 | 46.02 | radiation | 1 | 1440 | > th | dose dependent | sin | 12 | NA |
| 57 | 46.03 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 64 | 46.05 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 9 |
| 77 | 46.10 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 80 | 46.10 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 82 | 46.11 | radiation | 20 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 94 | 46.14 | humidity | 70 | 1440 | < th | dose dependent | sin | 5 | NA |
| 95 | 46.14 | radiation | 40 | 1440 | < th | dose dependent | sin | 12 | NA |
| 106 | 46.19 | radiation | 1 | 1440 | > th | dose dependent | rect. | 6 | 7 |
| 148 | 46.26 | radiation | 1 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 159 | 46.27 | radiation | 1 | 1440 | > th | dose dependent | sin | 4 | NA |
| 160 | 46.27 | radiation | 1 | 1440 | > th | dose dependent | no | NA | NA |
| 279 | 46.34 | radiation | 40 | 1440 | < th | dose dependent | rect. | 6 | 6 |
| 302 | 46.35 | radiation | 40 | 1440 | < th | dose dependent | rect. | 6 | 13 |
| 311 | 46.35 | radiation | 40 | 1440 | < th | dose dependent | rect. | 6 | 17 |
| 396 | 46.39 | radiation | 40 | 1440 | < th | dose dependent | no | NA | NA |
| 408 | 46.39 | radiation | 40 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 416 | 46.41 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 427 | 46.43 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 442 | 46.44 | radiation | 1 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 445 | 46.45 | radiation | 40 | 1440 | < th | dose dependent | sin | 3 | NA |
| 449 | 46.45 | radiation | 10 | 720 | < th | dose dependent | rect. | 20 | 11 |
| 450 | 46.45 | radiation | 40 | 1440 | < th | dose dependent | rect. | 23 | 13 |
| 574 | 46.49 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 578 | 46.49 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 18 |
| 581 | 46.49 | radiation | 40 | 1440 | < th | dose dependent | rect. | 8 | 4 |
| 611 | 46.50 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 22 |
| 659 | 46.51 | radiation | 20 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 681 | 46.52 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 711 | 46.53 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 833 | 46.60 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 23 |