BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0264800 Os06g0264800|AK105959
(156 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0264800 Conserved hypothetical protein 213 3e-56
Os02g0731600 Conserved hypothetical protein 128 2e-30
Os08g0430600 Conserved hypothetical protein 110 3e-25
Os06g0217700 Conserved hypothetical protein 75 3e-14
Os02g0759900 Conserved hypothetical protein 71 4e-13
Os09g0465800 Conserved hypothetical protein 70 7e-13
Os07g0469100 Similar to Thylakoid membrane phosphoprotein 1... 64 3e-11
>Os06g0264800 Conserved hypothetical protein
Length = 156
Score = 213 bits (543), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 115/156 (73%), Positives = 115/156 (73%)
Query: 1 MAAATAYTVALLGATGXXXXXXXXXXXXXXXXGGVLQPLRLQDAPRLSLLRVRXXXXXXX 60
MAAATAYTVALLGATG GGVLQPLRLQDAPRLSLLRVR
Sbjct: 1 MAAATAYTVALLGATGARVPAAPRSAALLPRRGGVLQPLRLQDAPRLSLLRVRAASDDTS 60
Query: 61 XXXXGDELVADLKAKWEAIEDKPTFLLYSGXXXXXXXXXXXXXXAINSVPLLPKILELVG 120
GDELVADLKAKWEAIEDKPTFLLYSG AINSVPLLPKILELVG
Sbjct: 61 TSASGDELVADLKAKWEAIEDKPTFLLYSGGAVVALWLTTVVVGAINSVPLLPKILELVG 120
Query: 121 LGYTGWFVYRYLLFKESRKELATDIETLKKKIAGTE 156
LGYTGWFVYRYLLFKESRKELATDIETLKKKIAGTE
Sbjct: 121 LGYTGWFVYRYLLFKESRKELATDIETLKKKIAGTE 156
>Os02g0731600 Conserved hypothetical protein
Length = 108
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/92 (66%), Positives = 72/92 (78%)
Query: 65 GDELVADLKAKWEAIEDKPTFLLYSGXXXXXXXXXXXXXXAINSVPLLPKILELVGLGYT 124
GDEL+ DLKAKW+A+E+K T L Y+G A+NSVPLLPK +ELVGLGYT
Sbjct: 17 GDELIEDLKAKWDAVENKSTVLTYAGGAIIALWLSSVIVGAVNSVPLLPKFMELVGLGYT 76
Query: 125 GWFVYRYLLFKESRKELATDIETLKKKIAGTE 156
GWFVYRYLLFKESRKELA D+++LKK+IAGTE
Sbjct: 77 GWFVYRYLLFKESRKELADDVDSLKKRIAGTE 108
>Os08g0430600 Conserved hypothetical protein
Length = 159
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 79/119 (66%), Gaps = 1/119 (0%)
Query: 39 LRLQDAPRLSLLRVRXXXXXXXXXXXGDE-LVADLKAKWEAIEDKPTFLLYSGXXXXXXX 97
LR +D+P+++LL+V+ D+ ++++LK KW+AIE+K + L Y G
Sbjct: 40 LRCEDSPKIALLQVQAMRSSEESSSDEDDEILSELKEKWDAIENKSSVLFYGGGAIIAVW 99
Query: 98 XXXXXXXAINSVPLLPKILELVGLGYTGWFVYRYLLFKESRKELATDIETLKKKIAGTE 156
A++SVP+LP ILELVGLGY+GWFVYRYLLFKE+R+ELA + LKK+I G E
Sbjct: 100 LSSIVVKAVDSVPVLPNILELVGLGYSGWFVYRYLLFKENREELANGFDALKKRITGNE 158
>Os06g0217700 Conserved hypothetical protein
Length = 223
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 66 DELVADLKAKWEAIEDKPTFLLYSGXXXXXXXXXXXXXXAINSVPLLPKILELVGLGYTG 125
D L L +K + ++ TF++Y AI+S+PL PKIL++VGLGYT
Sbjct: 132 DALSQALSSKLD-FKETSTFVMYGSGAFIAGWILSAVVSAIDSIPLFPKILQIVGLGYTI 190
Query: 126 WFVYRYLLFKESRKELATDIETLKKKIAG 154
WF RYLLFKE+R EL ++ LK+KI G
Sbjct: 191 WFSTRYLLFKENRDELFVKVDDLKRKITG 219
>Os02g0759900 Conserved hypothetical protein
Length = 205
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%)
Query: 79 IEDKPTFLLYSGXXXXXXXXXXXXXXAINSVPLLPKILELVGLGYTGWFVYRYLLFKESR 138
I+ PT +LY AI+S+PL+PK+LEL+G GY+ WF RYLLFKESR
Sbjct: 131 IQVTPTLVLYGSGALVVLWVLSSVVSAIDSIPLVPKVLELIGTGYSIWFTSRYLLFKESR 190
Query: 139 KELATDIETLKKKI 152
+L E LK++I
Sbjct: 191 DKLFAKFEDLKERI 204
>Os09g0465800 Conserved hypothetical protein
Length = 181
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 80 EDKPTFLLYSGXXXXXXXXXXXXXXAINSVPLLPKILELVGLGYTGWFVYRYLLFKESRK 139
E+ T L+Y A++SVPL+P+++E+VGLG+T WF RYL+FKE+R
Sbjct: 103 ENSYTALVYGTSALVTIWISSIVVSALDSVPLVPQVMEVVGLGFTVWFTSRYLIFKENRD 162
Query: 140 ELATDIETLKKKIAGT 155
EL T I ++KK+I G+
Sbjct: 163 ELITRIGSIKKQILGS 178
>Os07g0469100 Similar to Thylakoid membrane phosphoprotein 14 kDa, chloroplast
precursor
Length = 150
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%)
Query: 67 ELVADLKAKWEAIEDKPTFLLYSGXXXXXXXXXXXXXXAINSVPLLPKILELVGLGYTGW 126
E+V + W +EDK AI+ +PLLP +LELVG+GYTGW
Sbjct: 60 EVVKAAQDAWAKVEDKYAVTAIGVAALVGLWTAIGAIKAIDRLPLLPGVLELVGIGYTGW 119
Query: 127 FVYRYLLFKESRKELATDIETLKKKIAGTE 156
F YR L+F+ R+ L + I++ +I G+
Sbjct: 120 FTYRNLIFQPDREALVSKIKSTYNEITGSS 149
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.138 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,392,026
Number of extensions: 92880
Number of successful extensions: 124
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 7
Length of query: 156
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 64
Effective length of database: 12,232,113
Effective search space: 782855232
Effective search space used: 782855232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)