BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0258900 Os06g0258900|AK067794
(1376 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0258900 Ketose-bisphosphate aldolase, class-II family ... 2736 0.0
Os06g0677400 Hydroxyacid dehydrogenase/reductase family pro... 105 3e-22
Os01g0742300 Hydroxyacid dehydrogenase/reductase family pro... 90 1e-17
Os02g0562700 Similar to Gamma hydroxybutyrate dehydrogenase... 90 1e-17
Os01g0574600 Similar to Gamma hydroxybutyrate dehydrogenase... 82 3e-15
Os05g0565500 6-phosphogluconate dehydrogenase family protein 79 2e-14
>Os06g0258900 Ketose-bisphosphate aldolase, class-II family protein
Length = 1376
Score = 2736 bits (7091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1346/1376 (97%), Positives = 1346/1376 (97%)
Query: 1 MASGKVVSFVGADELGVSLAASFVRSGAIVRCFVAPGGDGSATALAELGGVRCASPAEAA 60
MASGKVVSFVGADELGVSLAASFVRSGAIVRCFVAPGGDGSATALAELGGVRCASPAEAA
Sbjct: 1 MASGKVVSFVGADELGVSLAASFVRSGAIVRCFVAPGGDGSATALAELGGVRCASPAEAA 60
Query: 61 RDAELVIVLSDTDGVDELFFGPEGIVKGLCSGAVVLIRSTMLPSHLEKLNQKLADEKKNA 120
RDAELVIVLSDTDGVDELFFGPEGIVKGLCSGAVVLIRSTMLPSHLEKLNQKLADEKKNA
Sbjct: 61 RDAELVIVLSDTDGVDELFFGPEGIVKGLCSGAVVLIRSTMLPSHLEKLNQKLADEKKNA 120
Query: 121 LLDGYIFSGLSDELKQKIVVVASGRHDVTERTGQFFSGLDTAVYFVEGEFGSSSKIKLVN 180
LLDGYIFSGLSDELKQKIVVVASGRHDVTERTGQFFSGLDTAVYFVEGEFGSSSKIKLVN
Sbjct: 121 LLDGYIFSGLSDELKQKIVVVASGRHDVTERTGQFFSGLDTAVYFVEGEFGSSSKIKLVN 180
Query: 181 DLLESIHFIASIEAMFLGVRAGIHPSIIYDIISNAAGSSRIFVEIVPKLLREDSLLIDYL 240
DLLESIHFIASIEAMFLGVRAGIHPSIIYDIISNAAGSSRIFVEIVPKLLREDSLLIDYL
Sbjct: 181 DLLESIHFIASIEAMFLGVRAGIHPSIIYDIISNAAGSSRIFVEIVPKLLREDSLLIDYL 240
Query: 241 ESSKTNAGYVMDMAKAVIFPLPLVAVSYQQLIHGCSSANGDALVSPLKVWEQSFGVNIID 300
ESSKTNAGYVMDMAKAVIFPLPLVAVSYQQLIHGCSSANGDALVSPLKVWEQSFGVNIID
Sbjct: 241 ESSKTNAGYVMDMAKAVIFPLPLVAVSYQQLIHGCSSANGDALVSPLKVWEQSFGVNIID 300
Query: 301 AASQQIYDASKLADQLVMACKTAKTIGFIGLGAMGFGMASHLLKSGFSVIAYDVYKPTLA 360
AASQQIYDASKLADQLVMACKTAKTIGFIGLGAMGFGMASHLLKSGFSVIAYDVYKPTLA
Sbjct: 301 AASQQIYDASKLADQLVMACKTAKTIGFIGLGAMGFGMASHLLKSGFSVIAYDVYKPTLA 360
Query: 361 RFTDLGGLTKDSPEEVSKDVEILVIMVANEVQAENVLYGNAGAVSVMAAGTSIILSSTVS 420
RFTDLGGLTKDSPEEVSKDVEILVIMVANEVQAENVLYGNAGAVSVMAAGTSIILSSTVS
Sbjct: 361 RFTDLGGLTKDSPEEVSKDVEILVIMVANEVQAENVLYGNAGAVSVMAAGTSIILSSTVS 420
Query: 421 PGFVIKLKERLEAECRDIKLVDAPVSGGVKRAAEGTLTIIASGTDEALQCTGSVLSALSE 480
PGFVIKLKERLEAECRDIKLVDAPVSGGVKRAAEGTLTIIASGTDEALQCTGSVLSALSE
Sbjct: 421 PGFVIKLKERLEAECRDIKLVDAPVSGGVKRAAEGTLTIIASGTDEALQCTGSVLSALSE 480
Query: 481 KLYVIKGGCGAASSVKMVNQLLAGVHIASAAEAMAFGARLNLRTRRLFEIIQHARGYSWM 540
KLYVIKGGCGAASSVKMVNQLLAGVHIASAAEAMAFGARLNLRTRRLFEIIQHARGYSWM
Sbjct: 481 KLYVIKGGCGAASSVKMVNQLLAGVHIASAAEAMAFGARLNLRTRRLFEIIQHARGYSWM 540
Query: 541 FGNRVPHMLDNDYTPYSAVDIFVKDLGIVSHESSNARIPLHVSSIAHQLFLSGSASGWGR 600
FGNRVPHMLDNDYTPYSAVDIFVKDLGIVSHESSNARIPLHVSSIAHQLFLSGSASGWGR
Sbjct: 541 FGNRVPHMLDNDYTPYSAVDIFVKDLGIVSHESSNARIPLHVSSIAHQLFLSGSASGWGR 600
Query: 601 FDDAAVVKVYETLTGVKVEGRPPMLNKEDVLSSLPAEWPEDPMDDLVSSASHNSKKILVV 660
FDDAAVVKVYETLTGVKVEGRPPMLNKEDVLSSLPAEWPEDPMDDLVSSASHNSKKILVV
Sbjct: 601 FDDAAVVKVYETLTGVKVEGRPPMLNKEDVLSSLPAEWPEDPMDDLVSSASHNSKKILVV 660
Query: 661 LDDDPTGTQTVHDIEVLTEWPVEALAEQFQKLPACFFILTNSRSMTAEKATLLVKDICRN 720
LDDDPTGTQTVHDIEVLTEWPVEALAEQFQKLPACFFILTNSRSMTAEKATLLVKDICRN
Sbjct: 661 LDDDPTGTQTVHDIEVLTEWPVEALAEQFQKLPACFFILTNSRSMTAEKATLLVKDICRN 720
Query: 721 LEAAAKSVPGVSYTVVLRGDSTLRGHFPEEADAVVSVLGEMDAWIICPFFLQGGRYTIDD 780
LEAAAKSVPGVSYTVVLRGDSTLRGHFPEEADAVVSVLGEMDAWIICPFFLQGGRYTIDD
Sbjct: 721 LEAAAKSVPGVSYTVVLRGDSTLRGHFPEEADAVVSVLGEMDAWIICPFFLQGGRYTIDD 780
Query: 781 IHYVADSDRLIPAGETEFAKDAAFGYKSSNLRQWVEEKTKGRISENQVSTISVNLLRKEG 840
IHYVADSDRLIPAGETEFAKDAAFGYKSSNLRQWVEEKTKGRISENQVSTISVNLLRKEG
Sbjct: 781 IHYVADSDRLIPAGETEFAKDAAFGYKSSNLRQWVEEKTKGRISENQVSTISVNLLRKEG 840
Query: 841 PNAVCQHLCSLKKGSACIVNAASERDMSVFAAGMIQAELKGKRFLCRTAASFVSXXXXXX 900
PNAVCQHLCSLKKGSACIVNAASERDMSVFAAGMIQAELKGKRFLCRTAASFVS
Sbjct: 841 PNAVCQHLCSLKKGSACIVNAASERDMSVFAAGMIQAELKGKRFLCRTAASFVSARIAIK 900
Query: 901 XXXXXXXTDLGLKRALTGGLIVVGSYVPKTTKQVDELRSQCEQSLRIIEVSVEMISMKSA 960
TDLGLKRALTGGLIVVGSYVPKTTKQVDELRSQCEQSLRIIEVSVEMISMKSA
Sbjct: 901 PKPPIRPTDLGLKRALTGGLIVVGSYVPKTTKQVDELRSQCEQSLRIIEVSVEMISMKSA 960
Query: 961 EDRDHEISRVIELGNAYIQSRKDTLVVTSRQLITGKTPEESLEINYKVSSALVEIVRGIG 1020
EDRDHEISRVIELGNAYIQSRKDTLVVTSRQLITGKTPEESLEINYKVSSALVEIVRGIG
Sbjct: 961 EDRDHEISRVIELGNAYIQSRKDTLVVTSRQLITGKTPEESLEINYKVSSALVEIVRGIG 1020
Query: 1021 SRPRYILAKGGITSSDLATKALEARRAKVMGQALAGVPLWQLGPESRHPGVPYIVFPGNV 1080
SRPRYILAKGGITSSDLATKALEARRAKVMGQALAGVPLWQLGPESRHPGVPYIVFPGNV
Sbjct: 1021 SRPRYILAKGGITSSDLATKALEARRAKVMGQALAGVPLWQLGPESRHPGVPYIVFPGNV 1080
Query: 1081 GDNSALAKVVQNWACPSRSSAKELLLNAENGGYAIGAFNVYNLEGIDAVVSAAEAEKSPA 1140
GDNSALAKVVQNWACPSRSSAKELLLNAENGGYAIGAFNVYNLEGIDAVVSAAEAEKSPA
Sbjct: 1081 GDNSALAKVVQNWACPSRSSAKELLLNAENGGYAIGAFNVYNLEGIDAVVSAAEAEKSPA 1140
Query: 1141 ILQVHPSALKQGGVPLVSCCIAAAEHASVPITVHYDHGTSKSDLLQALEMGFDSIMVDGS 1200
ILQVHPSALKQGGVPLVSCCIAAAEHASVPITVHYDHGTSKSDLLQALEMGFDSIMVDGS
Sbjct: 1141 ILQVHPSALKQGGVPLVSCCIAAAEHASVPITVHYDHGTSKSDLLQALEMGFDSIMVDGS 1200
Query: 1201 HLPLGKNILYTRSISSLAHSKGMLVEAELGRLSGTEDGLTVEEYEARFTDVAQALEFIDE 1260
HLPLGKNILYTRSISSLAHSKGMLVEAELGRLSGTEDGLTVEEYEARFTDVAQALEFIDE
Sbjct: 1201 HLPLGKNILYTRSISSLAHSKGMLVEAELGRLSGTEDGLTVEEYEARFTDVAQALEFIDE 1260
Query: 1261 TGIDSLAVCIGNVHGKYPPSGPNLRFDLLEDLRALTMKKGVSLVLHGASGLPHELVKECI 1320
TGIDSLAVCIGNVHGKYPPSGPNLRFDLLEDLRALTMKKGVSLVLHGASGLPHELVKECI
Sbjct: 1261 TGIDSLAVCIGNVHGKYPPSGPNLRFDLLEDLRALTMKKGVSLVLHGASGLPHELVKECI 1320
Query: 1321 ALGVRKFNVNTEVRNSYLESLKRPEKDLIHXXXXXXXXXXXXXXXXXRLFGSSGKA 1376
ALGVRKFNVNTEVRNSYLESLKRPEKDLIH RLFGSSGKA
Sbjct: 1321 ALGVRKFNVNTEVRNSYLESLKRPEKDLIHVMASAKEAMKAVVAEKMRLFGSSGKA 1376
>Os06g0677400 Hydroxyacid dehydrogenase/reductase family protein
Length = 342
Score = 105 bits (261), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 141/295 (47%), Gaps = 26/295 (8%)
Query: 324 KTIGFIGLGAMGFGMASHLLKSGFSVIAYDVYKPTLARFTDLGGLTKDSPEEVSKDVEIL 383
+ +GFIGLG MG MA +L+ +G+ V +DV + T+ +F+D G TK SP EVSK +++
Sbjct: 33 ENVGFIGLGNMGAHMARNLVMAGYKVTVHDVNENTMKKFSDDGIPTKLSPLEVSKSSDVV 92
Query: 384 VIMVANEVQAENVLYGNAGAVSVMAAGTSI-----ILSSTVSPGFVIK---------LKE 429
+ M+ + +V G G ++A G + I SSTV P K LKE
Sbjct: 93 ITMLPSSAHVLDVYNGRNG---LLANGGCLGPWLYIDSSTVDPQTSRKISMDISRCTLKE 149
Query: 430 RLEAECRDIKLVDAPVSGGVKRAAEGTLTIIASGTDEALQCTGSVLSALSEKLYVIKGGC 489
+ +A ++DAPVSGGV A G LT + G++EA +L ++ +K + GG
Sbjct: 150 K-KAYAEKPMMLDAPVSGGVPAAEAGKLTFMVGGSEEAYLAAKPLLLSMGKKT-IYCGGA 207
Query: 490 GAASSVKMVNQLLAGVHIASAAEAMAFGARLNLRTRRLFEIIQ--HARGYSWMFGNRVPH 547
G S K+ N + + + +EA A G L ++ L +I AR +S N VP
Sbjct: 208 GNGSVAKICNNMAMAISMLGVSEAFALGQNLGIKASVLTDIFNCSSARCWSSDTYNPVPG 267
Query: 548 -MLD----NDYTPYSAVDIFVKDLGIVSHESSNARIPLHVSSIAHQLFLSGSASG 597
M+D +Y + KDL + +S S A +++ A G
Sbjct: 268 VMMDVPSSRNYDGGFTSKLMTKDLDLAMASASGVGFNCPFGSQALEIYRKLCADG 322
>Os01g0742300 Hydroxyacid dehydrogenase/reductase family protein
Length = 316
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 135/302 (44%), Gaps = 13/302 (4%)
Query: 326 IGFIGLGAMGFGMASHLLKSGFSVIAYDVYKPTLARFTDLGGLTKDSPEEVSKDVEILVI 385
+ ++G G MG MA HLL +G+++ Y+ G +SP + +++ +
Sbjct: 22 VAWVGTGVMGQSMAGHLLAAGYALTVYNRTASKAEGLVSRGATLAESPRAAAAAADVIFL 81
Query: 386 MVA--NEVQAENVLYGNAGAVSVMAAGTSIILSSTVSPGFVIKLKERLEAECRDIKLVDA 443
MV ++V++ + L + GA++ +A G ++ +T P + + A + VDA
Sbjct: 82 MVGFPSDVRSTS-LDPSTGALAGLAPGGLLVDMTTSDP--TLAAEIAEAAAAKSCAAVDA 138
Query: 444 PVSGGVKRAAEGTLTIIASGTDEALQCTGSVLSALSEKLYVIKGGCGAASSVKMVNQLLA 503
PVSGG + A TL+I A G + + + LY+ GG GA K+ NQ+
Sbjct: 139 PVSGGDRGARSATLSIFAGGDAAVVARLAPLFKLMGNALYM--GGPGAGQRAKLGNQIAI 196
Query: 504 GVHIASAAEAMAFGARLNLRTRRLFEIIQHARGYSW---MFGNRVPHMLDNDYTPYSAVD 560
+ E M + + L + E I S ++G R ML+ D V
Sbjct: 197 ASTMVGLVEGMVYAHKAGLDVAKWLEAISTGAAGSKSLDLYGKR---MLERDMAAGFYVR 253
Query: 561 IFVKDLGIVSHESSNARIPLHVSSIAHQLFLSGSASGWGRFDDAAVVKVYETLTGVKVEG 620
FVKDLGI E + L ++AHQL++S A G G A++ E L ++
Sbjct: 254 HFVKDLGICLSECQAMGLALPGLALAHQLYVSLLAHGEGGLGTQALILAIERLNNTCLDK 313
Query: 621 RP 622
+P
Sbjct: 314 KP 315
>Os02g0562700 Similar to Gamma hydroxybutyrate dehydrogenase (EC 1.1.1.61)
Length = 293
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 131/296 (44%), Gaps = 6/296 (2%)
Query: 326 IGFIGLGAMGFGMASHLLKSGFSVIAYDVYKPTLARFTDLGGLTKDSPEEVSKDVEILVI 385
+GF+GLG MG MA++LL+ GF V ++ LG ++P V +
Sbjct: 3 VGFLGLGIMGKAMAANLLRHGFRVTVWNRTLSKCQELVALGAAVGETPAAVVAKCRYTIA 62
Query: 386 MVANEVQAENVLYGNAGAVSVMAAGTSIILSSTVSPGFVIKLKERLEAECRDIKLVDAPV 445
M+++ A +V++ G + + G + STV K+ E ++ + V+APV
Sbjct: 63 MLSDPSAALSVVFDKDGVLEQIGEGKGYVDMSTVDAATSCKISEAIKQ--KGGAFVEAPV 120
Query: 446 SGGVKRAAEGTLTIIASGTDEALQCTGSVLSALSEKLYVIKGGCGAASSVKMVNQLLAGV 505
SG K A +G L I+A+G L +K + + G G + +K+V ++ G
Sbjct: 121 SGSKKPAEDGQLVILAAGDKVLYDDMVPAFDVLGKKSFFL-GEIGNGAKMKLVVNMIMGS 179
Query: 506 HIASAAEAMAFGARLNLRTRRLFEIIQHARGYSWMFGNRVPHMLDNDYTPYSAVDIFVKD 565
+ + +E ++ L + L +++ + MF + P ML Y P + KD
Sbjct: 180 MMNALSEGLSLADNSGLSPQTLLDVLDLGAIANPMFKLKGPSMLQGSYNPAFPLKHQQKD 239
Query: 566 LGIVSHESSNARIPLHVSSIAHQLFLSGSASGWGRFDDAAVVKVYETLTGVKVEGR 621
+ + + + V++ +++ F + G G D +A VYE L G G+
Sbjct: 240 MRLALALGDENAVSMPVAAASNEAFKKARSLGLGDLDFSA---VYEVLKGAGGSGK 292
>Os01g0574600 Similar to Gamma hydroxybutyrate dehydrogenase (EC 1.1.1.61)
Length = 341
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 129/288 (44%), Gaps = 7/288 (2%)
Query: 326 IGFIGLGAMGFGMASHLLKSGFSVIAYDVYKPTLARFTDLGGLTKDSPEEVSKDVEILVI 385
+GF+GLG MG MAS+L+ +G V ++ + LG + SP +V+ ++
Sbjct: 53 VGFLGLGIMGAPMASNLINAGCDVTVWNRTRSKCDPLLSLGAKYEPSPADVASSCDVTFA 112
Query: 386 MVANEVQAENVLYGNAGAVSVMAAGTSIILSSTVSPGFVIKLKERLEAECRDIKLVDAPV 445
M+A+ A V G GA MA G + STV + + + + ++APV
Sbjct: 113 MLADPESAVEVACGANGAAQGMAPGKGYVDVSTVDAATSKLIGKHITS--TGASFLEAPV 170
Query: 446 SGGVKRAAEGTLTIIASGTDEALQCTGSVLSALSEKLYVIKGGCGAASSVKMVNQLLAGV 505
SG K A +G L + +G + S+L + + + + G G + +K+V ++ G
Sbjct: 171 SGSKKPAEDGLLIFLTAGDESLYNRVASLLDVMGKSRFFL-GDVGKGADMKLVVNMVMGS 229
Query: 506 HIASAAEAMAFGARLNLRTRRLFEIIQHARGYSWMFGNRVPHMLDNDYTPYSAVDIFVKD 565
+ S +E + ++ L L E+I + MF + P M+ Y + KD
Sbjct: 230 MMVSFSEGLLLSEKVGLDPNTLVEVISQGAISAPMFSLKGPSMVKAAYPTAFPLKHQQKD 289
Query: 566 --LGIVSHESSNARIPLHVSSIAHQLFLSGSASGWGRFDDAAVVKVYE 611
L + ES + IP + A++L+ + G D +AV++ +
Sbjct: 290 LRLALALAESVSQSIP--TVAAANELYKVAKSLGLADQDFSAVIEALK 335
>Os05g0565500 6-phosphogluconate dehydrogenase family protein
Length = 312
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 139/302 (46%), Gaps = 15/302 (4%)
Query: 323 AKTIGFIGLGAMGFGMASHLLKSGFSVIAYDVYKPTLARFTDLGGLTKDSPEEVSKDVEI 382
A +G++G+G MG MA+ LL +GF+V AY G SP V+ ++
Sbjct: 18 ATRVGWVGIGVMGGAMAARLLAAGFAVTAYARTPAKAEALVAAGASLAGSPAAVAAACDV 77
Query: 383 LVIMVAN--EVQAENVLYGNAGAVSVMAAGTSIILSSTVSPGFVIKLKERLEAECRDIKL 440
+ MV N +V+A VL +G ++ + G ++ ++ SP + + A
Sbjct: 78 VFTMVGNPGDVRAV-VLDAASGVLAGLRPGGVLVDCTSSSP--SLAREVAAAARAAGCYA 134
Query: 441 VDAPVSGGVKRAAEGTLTIIASGTDEALQCTGSVLSALSEKLYVIKGGCGAASSVKMVNQ 500
VD+PVSGG A +G L ++A G + + + + L Y+ G G+ S K+ NQ
Sbjct: 135 VDSPVSGGDVGARDGALALLAGGDEAVVSWLAPLFAHLGRPTYM--GPPGSGQSSKIANQ 192
Query: 501 LLAGVHIASAAEAMAFGARLNLRTRRLFEII-QHARGYSWM--FGNRVPHMLDNDYTPYS 557
+ + A+EA+AF L + + + A G M FG R ML ++
Sbjct: 193 IAVAGAVVGASEALAFANAAGLDAPLFLDAVSKGAAGSRVMDIFGER---MLRREFASGG 249
Query: 558 AVDIFVKDLGIV--SHESSNARIPLHVSSIAHQLFLSGSASGWGRFDDAAVVKVYETLTG 615
+V +KDLG+ + E L +++ Q+F + +A+G G ++ V E L G
Sbjct: 250 SVKYIIKDLGMALETEEGPEGAKALPGAAMFRQMFSAMAANGDGDLSLQGLITVVERLNG 309
Query: 616 VK 617
++
Sbjct: 310 IR 311
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 42,818,192
Number of extensions: 1766052
Number of successful extensions: 4654
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 4635
Number of HSP's successfully gapped: 6
Length of query: 1376
Length of database: 17,035,801
Length adjustment: 113
Effective length of query: 1263
Effective length of database: 11,135,619
Effective search space: 14064286797
Effective search space used: 14064286797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 162 (67.0 bits)