Os02g0562700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Gamma hydroxybutyrate dehydrogenase (EC 1.1.1.61).
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Os02g0562700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Gamma hydroxybutyrate dehydrogenase (EC 1.1.1.61).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.51 | 0.26 | 13.3 | -0.356 | 0.916 | 1.17 | 0.569 | 0.443 | -0.213 | 8.63 | 24.5 | 1258 | -- | -- |
| 30.71 | 0.258 | 13.3 | -0.287 | 0.916 | 1.12 | 0.583 | -- | -0.193 | 8.62 | 24.8 | 1254 | -- | -- |
| 31.56 | 0.262 | 13.3 | -0.349 | 0.914 | 1.19 | -- | 0.522 | -0.216 | 8.62 | 24.4 | 1255 | -- | -- |
| 31.82 | 0.263 | 13.3 | -0.263 | 0.92 | 1.12 | -- | -- | -0.193 | 8.62 | 24.8 | 1273 | -- | -- |
| 55.71 | 0.348 | 13.3 | -0.275 | -- | 1.6 | -- | 0.464 | -0.141 | -- | 30.2 | 648 | -- | -- |
| 47.66 | 0.324 | 13.4 | -0.616 | 0.934 | -- | 0.598 | -- | -0.426 | 8.91 | -- | -- | -- | -- |
| 48.88 | 0.327 | 13.4 | -0.596 | 0.932 | -- | -- | -- | -0.426 | 8.91 | -- | -- | -- | -- |
| 55.83 | 0.348 | 13.3 | -0.18 | -- | 1.61 | -- | -- | -0.121 | -- | 30.46 | 652 | -- | -- |
| 33.36 | 0.269 | 13.3 | -- | 0.922 | 1.27 | -- | -- | -0.15 | 8.6 | 24.6 | 1292 | -- | -- |
| 98.58 | 0.464 | 13.4 | -0.596 | -- | -- | -- | -- | -0.419 | -- | -- | -- | -- | -- |
| 58.24 | 0.357 | 13.4 | -- | 0.931 | -- | -- | -- | -0.359 | 8.96 | -- | -- | -- | -- |
| 56.55 | 0.35 | 13.3 | -- | -- | 1.68 | -- | -- | -0.0881 | -- | 30.3 | 655 | -- | -- |
| 107.96 | 0.485 | 13.4 | -- | -- | -- | -- | -- | -0.353 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 6 | 30.39 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 12 | 30.70 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 19 | 30.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 22 | 30.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 19 |
| 23 | 30.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 12 |
| 44 | 30.97 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 46 | 30.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 22 |
| 100 | 31.06 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 105 | 31.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 123 | 31.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 132 | 31.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 23 |
| 144 | 31.11 | temperature | 25 | 720 | < th | dose dependent | sin | 0 | NA |
| 173 | 31.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 4 |
| 182 | 31.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 222 | 31.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 18 |
| 285 | 31.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 336 | 31.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 353 | 31.43 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 427 | 31.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 21 |
| 432 | 31.53 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 435 | 31.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 461 | 31.55 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 467 | 31.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 507 | 31.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 570 | 31.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 16 |
| 605 | 31.68 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 643 | 31.72 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 677 | 31.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 689 | 31.77 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 10 |
| 691 | 31.77 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 14 |
| 701 | 31.78 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 774 | 31.83 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 819 | 31.86 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 925 | 31.93 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 9 |
| 938 | 31.94 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 11 |