BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0562700 Os02g0562700|AK071800
(293 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0562700 Similar to Gamma hydroxybutyrate dehydrogenase... 585 e-168
Os01g0574600 Similar to Gamma hydroxybutyrate dehydrogenase... 327 8e-90
Os05g0565500 6-phosphogluconate dehydrogenase family protein 120 1e-27
Os01g0742300 Hydroxyacid dehydrogenase/reductase family pro... 114 7e-26
Os06g0677400 Hydroxyacid dehydrogenase/reductase family pro... 102 2e-22
Os06g0258900 Ketose-bisphosphate aldolase, class-II family ... 89 3e-18
>Os02g0562700 Similar to Gamma hydroxybutyrate dehydrogenase (EC 1.1.1.61)
Length = 293
Score = 585 bits (1509), Expect = e-168, Method: Compositional matrix adjust.
Identities = 293/293 (100%), Positives = 293/293 (100%)
Query: 1 MEVGFLGLGIMGKAMAANLLRHGFRVTVWNRTLSKCQELVALGAAVGETPAAVVAKCRYT 60
MEVGFLGLGIMGKAMAANLLRHGFRVTVWNRTLSKCQELVALGAAVGETPAAVVAKCRYT
Sbjct: 1 MEVGFLGLGIMGKAMAANLLRHGFRVTVWNRTLSKCQELVALGAAVGETPAAVVAKCRYT 60
Query: 61 IAMLSDPSAALSVVFDKDGVLEQIGEGKGYVDMSTVDAATSCKISEAIKQKGGAFVEAPV 120
IAMLSDPSAALSVVFDKDGVLEQIGEGKGYVDMSTVDAATSCKISEAIKQKGGAFVEAPV
Sbjct: 61 IAMLSDPSAALSVVFDKDGVLEQIGEGKGYVDMSTVDAATSCKISEAIKQKGGAFVEAPV 120
Query: 121 SGSKKPAEDGQLVILAAGDKVLYDDMVPAFDVLGKKSFFLGEIGNGAKMKLVVNMIMGSM 180
SGSKKPAEDGQLVILAAGDKVLYDDMVPAFDVLGKKSFFLGEIGNGAKMKLVVNMIMGSM
Sbjct: 121 SGSKKPAEDGQLVILAAGDKVLYDDMVPAFDVLGKKSFFLGEIGNGAKMKLVVNMIMGSM 180
Query: 181 MNALSEGLSLADNSGLSPQTLLDVLDLGAIANPMFKLKGPSMLQGSYNPAFPLKHQQKDM 240
MNALSEGLSLADNSGLSPQTLLDVLDLGAIANPMFKLKGPSMLQGSYNPAFPLKHQQKDM
Sbjct: 181 MNALSEGLSLADNSGLSPQTLLDVLDLGAIANPMFKLKGPSMLQGSYNPAFPLKHQQKDM 240
Query: 241 RLALALGDENAVSMPVAAASNEAFKKARSLGLGDLDFSAVYEVLKGAGGSGKA 293
RLALALGDENAVSMPVAAASNEAFKKARSLGLGDLDFSAVYEVLKGAGGSGKA
Sbjct: 241 RLALALGDENAVSMPVAAASNEAFKKARSLGLGDLDFSAVYEVLKGAGGSGKA 293
>Os01g0574600 Similar to Gamma hydroxybutyrate dehydrogenase (EC 1.1.1.61)
Length = 341
Score = 327 bits (837), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 165/284 (58%), Positives = 207/284 (72%)
Query: 2 EVGFLGLGIMGKAMAANLLRHGFRVTVWNRTLSKCQELVALGAAVGETPAAVVAKCRYTI 61
+VGFLGLGIMG MA+NL+ G VTVWNRT SKC L++LGA +PA V + C T
Sbjct: 52 KVGFLGLGIMGAPMASNLINAGCDVTVWNRTRSKCDPLLSLGAKYEPSPADVASSCDVTF 111
Query: 62 AMLSDPSAALSVVFDKDGVLEQIGEGKGYVDMSTVDAATSCKISEAIKQKGGAFVEAPVS 121
AML+DP +A+ V +G + + GKGYVD+STVDAATS I + I G +F+EAPVS
Sbjct: 112 AMLADPESAVEVACGANGAAQGMAPGKGYVDVSTVDAATSKLIGKHITSTGASFLEAPVS 171
Query: 122 GSKKPAEDGQLVILAAGDKVLYDDMVPAFDVLGKKSFFLGEIGNGAKMKLVVNMIMGSMM 181
GSKKPAEDG L+ L AGD+ LY+ + DV+GK FFLG++G GA MKLVVNM+MGSMM
Sbjct: 172 GSKKPAEDGLLIFLTAGDESLYNRVASLLDVMGKSRFFLGDVGKGADMKLVVNMVMGSMM 231
Query: 182 NALSEGLSLADNSGLSPQTLLDVLDLGAIANPMFKLKGPSMLQGSYNPAFPLKHQQKDMR 241
+ SEGL L++ GL P TL++V+ GAI+ PMF LKGPSM++ +Y AFPLKHQQKD+R
Sbjct: 232 VSFSEGLLLSEKVGLDPNTLVEVISQGAISAPMFSLKGPSMVKAAYPTAFPLKHQQKDLR 291
Query: 242 LALALGDENAVSMPVAAASNEAFKKARSLGLGDLDFSAVYEVLK 285
LALAL + + S+P AA+NE +K A+SLGL D DFSAV E LK
Sbjct: 292 LALALAESVSQSIPTVAAANELYKVAKSLGLADQDFSAVIEALK 335
>Os05g0565500 6-phosphogluconate dehydrogenase family protein
Length = 312
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 151/287 (52%), Gaps = 4/287 (1%)
Query: 2 EVGFLGLGIMGKAMAANLLRHGFRVTVWNRTLSKCQELVALGAAVGETPAAVVAKCRYTI 61
VG++G+G+MG AMAA LL GF VT + RT +K + LVA GA++ +PAAV A C
Sbjct: 20 RVGWVGIGVMGGAMAARLLAAGFAVTAYARTPAKAEALVAAGASLAGSPAAVAAACDVVF 79
Query: 62 AMLSDPSAALSVVFD-KDGVLEQIGEGKGYVDMSTVDAATSCKISEAIKQKGGAFVEAPV 120
M+ +P +VV D GVL + G VD ++ + + +++ A + G V++PV
Sbjct: 80 TMVGNPGDVRAVVLDAASGVLAGLRPGGVLVDCTSSSPSLAREVAAAARAAGCYAVDSPV 139
Query: 121 SGSKKPAEDGQLVILAAGDKVLYDDMVPAFDVLGKKSFFLGEIGNGAKMKLVVNMIMGSM 180
SG A DG L +LA GD+ + + P F LG+ + ++G G+G K+ + +
Sbjct: 140 SGGDVGARDGALALLAGGDEAVVSWLAPLFAHLGRPT-YMGPPGSGQSSKIANQIAVAGA 198
Query: 181 MNALSEGLSLADNSGLSPQTLLDVLDLGAIANPMFKLKGPSMLQGSYNPAFPLKHQQKDM 240
+ SE L+ A+ +GL LD + GA + + + G ML+ + +K+ KD+
Sbjct: 199 VVGASEALAFANAAGLDAPLFLDAVSKGAAGSRVMDIFGERMLRREFASGGSVKYIIKDL 258
Query: 241 RLALAL--GDENAVSMPVAAASNEAFKKARSLGLGDLDFSAVYEVLK 285
+AL G E A ++P AA + F + G GDL + V++
Sbjct: 259 GMALETEEGPEGAKALPGAAMFRQMFSAMAANGDGDLSLQGLITVVE 305
>Os01g0742300 Hydroxyacid dehydrogenase/reductase family protein
Length = 316
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 140/280 (50%), Gaps = 2/280 (0%)
Query: 2 EVGFLGLGIMGKAMAANLLRHGFRVTVWNRTLSKCQELVALGAAVGETPAAVVAKCRYTI 61
V ++G G+MG++MA +LL G+ +TV+NRT SK + LV+ GA + E+P A A
Sbjct: 21 RVAWVGTGVMGQSMAGHLLAAGYALTVYNRTASKAEGLVSRGATLAESPRAAAAAADVIF 80
Query: 62 AMLSDPSAALSVVFD-KDGVLEQIGEGKGYVDMSTVDAATSCKISEAIKQKGGAFVEAPV 120
M+ PS S D G L + G VDM+T D + +I+EA K A V+APV
Sbjct: 81 LMVGFPSDVRSTSLDPSTGALAGLAPGGLLVDMTTSDPTLAAEIAEAAAAKSCAAVDAPV 140
Query: 121 SGSKKPAEDGQLVILAAGDKVLYDDMVPAFDVLGKKSFFLGEIGNGAKMKLVVNMIMGSM 180
SG + A L I A GD + + P F ++G + ++G G G + KL + + S
Sbjct: 141 SGGDRGARSATLSIFAGGDAAVVARLAPLFKLMG-NALYMGGPGAGQRAKLGNQIAIAST 199
Query: 181 MNALSEGLSLADNSGLSPQTLLDVLDLGAIANPMFKLKGPSMLQGSYNPAFPLKHQQKDM 240
M L EG+ A +GL L+ + GA + L G ML+ F ++H KD+
Sbjct: 200 MVGLVEGMVYAHKAGLDVAKWLEAISTGAAGSKSLDLYGKRMLERDMAAGFYVRHFVKDL 259
Query: 241 RLALALGDENAVSMPVAAASNEAFKKARSLGLGDLDFSAV 280
+ L+ +++P A +++ + + G G L A+
Sbjct: 260 GICLSECQAMGLALPGLALAHQLYVSLLAHGEGGLGTQAL 299
>Os06g0677400 Hydroxyacid dehydrogenase/reductase family protein
Length = 342
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 136/302 (45%), Gaps = 23/302 (7%)
Query: 2 EVGFLGLGIMGKAMAANLLRHGFRVTVWNRTLSKCQELVALGAAVGETPAAVVAKCRYTI 61
VGF+GLG MG MA NL+ G++VTV + + ++ G +P V I
Sbjct: 34 NVGFIGLGNMGAHMARNLVMAGYKVTVHDVNENTMKKFSDDGIPTKLSPLEVSKSSDVVI 93
Query: 62 AMLSDPSAALSVVFDKDGVLEQIGE-GKG-YVDMSTVDAATSCKISEAIKQ----KGGAF 115
ML + L V ++G+L G G Y+D STVD TS KIS I + + A+
Sbjct: 94 TMLPSSAHVLDVYNGRNGLLANGGCLGPWLYIDSSTVDPQTSRKISMDISRCTLKEKKAY 153
Query: 116 VE------APVSGSKKPAEDGQLVILAAGDKVLYDDMVPAFDVLGKKSFFLGEIGNGAKM 169
E APVSG AE G+L + G + Y P +GKK+ + G GNG+
Sbjct: 154 AEKPMMLDAPVSGGVPAAEAGKLTFMVGGSEEAYLAAKPLLLSMGKKTIYCGGAGNGSVA 213
Query: 170 KLVVNMIMGSMMNALSEGLSLADNSGLSPQTLLDVLDLGA-------IANPM--FKLKGP 220
K+ NM M M +SE +L N G+ L D+ + + NP+ + P
Sbjct: 214 KICNNMAMAISMLGVSEAFALGQNLGIKASVLTDIFNCSSARCWSSDTYNPVPGVMMDVP 273
Query: 221 SMLQGSYNPAFPLKHQQKDMRLALALGDENAVSMPVAAASNEAFKKARSLGLGDLDFSAV 280
S +Y+ F K KD+ LA+A + P + + E ++K + G DFS
Sbjct: 274 S--SRNYDGGFTSKLMTKDLDLAMASASGVGFNCPFGSQALEIYRKLCADGCELKDFSCA 331
Query: 281 YE 282
+
Sbjct: 332 FR 333
>Os06g0258900 Ketose-bisphosphate aldolase, class-II family protein
Length = 1376
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 131/296 (44%), Gaps = 6/296 (2%)
Query: 3 VGFLGLGIMGKAMAANLLRHGFRVTVWNRTLSKCQELVALGAAVGETPAAVVAKCRYTIA 62
+GF+GLG MG MA++LL+ GF V ++ LG ++P V +
Sbjct: 326 IGFIGLGAMGFGMASHLLKSGFSVIAYDVYKPTLARFTDLGGLTKDSPEEVSKDVEILVI 385
Query: 63 MLSDPSAALSVVFDKDGVLEQIGEGKGYVDMSTVDAATSCKISEAIKQ--KGGAFVEAPV 120
M+++ A +V++ G + + G + STV K+ E ++ + V+APV
Sbjct: 386 MVANEVQAENVLYGNAGAVSVMAAGTSIILSSTVSPGFVIKLKERLEAECRDIKLVDAPV 445
Query: 121 SGSKKPAEDGQLVILAAGDKVLYDDMVPAFDVLGKKSFFL-GEIGNGAKMKLVVNMIMGS 179
SG K A +G L I+A+G L +K + + G G + +K+V ++ G
Sbjct: 446 SGGVKRAAEGTLTIIASGTDEALQCTGSVLSALSEKLYVIKGGCGAASSVKMVNQLLAGV 505
Query: 180 MMNALSEGLSLADNSGLSPQTLLDVLDLGAIANPMFKLKGPSMLQGSYNPAFPLKHQQKD 239
+ + +E ++ L + L +++ + MF + P ML Y P + KD
Sbjct: 506 HIASAAEAMAFGARLNLRTRRLFEIIQHARGYSWMFGNRVPHMLDNDYTPYSAVDIFVKD 565
Query: 240 MRLALALGDENAVSMPVAAASNEAFKKARSLGLGDLDFSA---VYEVLKGAGGSGK 292
+ + + + V++ +++ F + G G D +A VYE L G G+
Sbjct: 566 LGIVSHESSNARIPLHVSSIAHQLFLSGSASGWGRFDDAAVVKVYETLTGVKVEGR 621
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,942,684
Number of extensions: 417339
Number of successful extensions: 1079
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1072
Number of HSP's successfully gapped: 6
Length of query: 293
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 193
Effective length of database: 11,814,401
Effective search space: 2280179393
Effective search space used: 2280179393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)