Os06g0677400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hydroxyacid dehydrogenase/reductase family protein.
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Os06g0677400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hydroxyacid dehydrogenase/reductase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.16 | 0.309 | 8.58 | -1.06 | 0.313 | 0.531 | 0.394 | -0.392 | -0.00245 | 2.09 | 26.7 | 89 | -- | -- |
| 43.46 | 0.307 | 8.59 | -1.06 | 0.377 | 0.505 | 0.155 | -- | -0.0109 | 1.64 | 32.73 | 93 | -- | -- |
| 43.35 | 0.307 | 8.58 | -1.06 | 0.332 | 0.517 | -- | -0.0737 | -0.00731 | 1.82 | 28.16 | 93 | -- | -- |
| 43.37 | 0.307 | 8.58 | -1.06 | 0.328 | 0.521 | -- | -- | -0.0056 | 1.86 | 28.28 | 93 | -- | -- |
| 43.78 | 0.308 | 8.58 | -1.02 | -- | 0.746 | -- | -0.0267 | 0.0118 | -- | 18.71 | 177 | -- | -- |
| 47.93 | 0.325 | 8.6 | -1.09 | 0.776 | -- | 0.0716 | -- | -0.0422 | 1.22 | -- | -- | -- | -- |
| 47.96 | 0.324 | 8.6 | -1.09 | 0.776 | -- | -- | -- | -0.0426 | 1.22 | -- | -- | -- | -- |
| 43.73 | 0.308 | 8.58 | -1.05 | -- | 0.732 | -- | -- | -0.00167 | -- | 16.86 | 177 | -- | -- |
| 71.85 | 0.395 | 8.55 | -- | 0.152 | 0.682 | -- | -- | 0.119 | 23.7 | 24.34 | 179 | -- | -- |
| 85.17 | 0.431 | 8.58 | -1.06 | -- | -- | -- | -- | -0.0268 | -- | -- | -- | -- | -- |
| 79.17 | 0.416 | 8.57 | -- | 0.757 | -- | -- | -- | 0.0786 | 1.16 | -- | -- | -- | -- |
| 72.27 | 0.396 | 8.55 | -- | -- | 0.791 | -- | -- | 0.121 | -- | 23.29 | 176 | -- | -- |
| 114.72 | 0.5 | 8.56 | -- | -- | -- | -- | -- | 0.0906 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.39 | humidity | 70 | 270 | > th | dose independent | rect. | 1 | 16 |
| 9 | 41.22 | radiation | 30 | 90 | < th | dose dependent | rect. | 13 | 21 |
| 17 | 41.41 | radiation | 20 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 23 | 41.58 | humidity | 70 | 270 | > th | dose independent | rect. | 11 | 7 |
| 28 | 41.67 | radiation | 40 | 270 | < th | dose dependent | rect. | 12 | 19 |
| 33 | 41.74 | radiation | 30 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 37 | 41.83 | humidity | 70 | 270 | > th | dose independent | rect. | 13 | 4 |
| 38 | 41.83 | humidity | 60 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 42 | 41.89 | radiation | 30 | 270 | < th | dose dependent | rect. | 12 | 6 |
| 44 | 41.89 | radiation | 30 | 270 | < th | dose dependent | rect. | 23 | 19 |
| 58 | 41.96 | humidity | 70 | 720 | < th | dose independent | rect. | 8 | 5 |
| 68 | 42.01 | radiation | 20 | 90 | < th | dose independent | rect. | 12 | 22 |
| 84 | 42.07 | humidity | 60 | 270 | > th | dose dependent | rect. | 11 | 7 |
| 94 | 42.10 | humidity | 70 | 720 | > th | dose independent | rect. | 9 | 5 |
| 104 | 42.13 | humidity | 70 | 720 | > th | dose independent | rect. | 3 | 10 |
| 122 | 42.18 | radiation | 30 | 270 | < th | dose independent | rect. | 12 | 19 |
| 145 | 42.23 | humidity | 70 | 720 | > th | dose independent | rect. | 6 | 8 |
| 187 | 42.31 | radiation | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 198 | 42.35 | radiation | 20 | 270 | < th | dose independent | rect. | 12 | 6 |
| 209 | 42.37 | humidity | 70 | 720 | > th | dose independent | rect. | 20 | 18 |
| 222 | 42.39 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 16 |
| 240 | 42.43 | humidity | 70 | 720 | > th | dose independent | sin | 5 | NA |
| 252 | 42.45 | humidity | 70 | 720 | < th | dose independent | sin | 5 | NA |
| 263 | 42.46 | radiation | 20 | 270 | < th | dose independent | rect. | 23 | 19 |
| 292 | 42.50 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 16 |
| 299 | 42.51 | radiation | 10 | 270 | < th | dose dependent | sin | 2 | NA |
| 359 | 42.61 | humidity | 70 | 270 | > th | dose independent | rect. | 10 | 21 |
| 381 | 42.65 | humidity | 60 | 90 | > th | dose dependent | sin | 1 | NA |
| 387 | 42.66 | radiation | 20 | 30 | < th | dose dependent | sin | 23 | NA |
| 480 | 42.76 | humidity | 60 | 90 | > th | dose dependent | rect. | 23 | 22 |
| 508 | 42.80 | humidity | 90 | 4320 | > th | dose dependent | rect. | 5 | 5 |
| 567 | 42.88 | radiation | 20 | 270 | < th | dose dependent | rect. | 15 | 1 |
| 582 | 42.89 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 597 | 42.91 | radiation | 20 | 90 | < th | dose independent | rect. | 23 | 23 |
| 654 | 42.97 | humidity | 60 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 658 | 42.98 | humidity | 80 | 90 | > th | dose independent | sin | 1 | NA |
| 667 | 42.98 | radiation | 20 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 703 | 43.03 | radiation | 10 | 270 | > th | dose independent | sin | 4 | NA |
| 719 | 43.03 | humidity | 50 | 10 | > th | dose dependent | rect. | 13 | 7 |
| 759 | 43.07 | humidity | 70 | 90 | < th | dose independent | rect. | 19 | 22 |
| 760 | 43.07 | radiation | 10 | 270 | > th | dose independent | rect. | 15 | 23 |
| 761 | 43.07 | radiation | 1 | 270 | > th | dose dependent | sin | 5 | NA |
| 770 | 43.08 | humidity | 80 | 90 | < th | dose independent | rect. | 8 | 9 |
| 799 | 43.10 | humidity | 60 | 720 | > th | dose dependent | rect. | 8 | 6 |
| 802 | 43.10 | humidity | 60 | 720 | > th | dose dependent | rect. | 6 | 8 |
| 874 | 43.17 | humidity | 80 | 90 | < th | dose independent | sin | 0 | NA |
| 875 | 43.17 | radiation | 10 | 90 | > th | dose independent | sin | 1 | NA |
| 902 | 43.19 | radiation | 10 | 30 | > th | dose independent | rect. | 8 | 10 |
| 932 | 43.20 | radiation | 20 | 720 | > th | dose independent | rect. | 6 | 7 |
| 956 | 43.21 | radiation | 20 | 10 | < th | dose dependent | rect. | 4 | 18 |
| 959 | 43.22 | wind | 1 | 14400 | < th | dose independent | rect. | 3 | 2 |
| 971 | 43.23 | radiation | 30 | 90 | < th | dose dependent | no | NA | NA |
| 972 | 43.23 | humidity | 80 | 720 | < th | dose dependent | rect. | 8 | 5 |
| 985 | 43.24 | humidity | 90 | 4320 | > th | dose dependent | rect. | 2 | 8 |