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Os01g0742300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hydroxyacid dehydrogenase/reductase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0156) R2 : 0.695
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.23 (0.0395) R2dC : 0.653 R2C : 0.641
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.26 (0.0327) R2dN8 : 0.0546 R2N8 : 0.0423
σ : 0.293
deviance : 39.19
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C
peak time of C : 20.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.59 0.251 12 0.145 0.933 -0.512 -1.32 0.591 -0.273 21.1 9.463 729 -- --
29.09 0.251 12 0.135 0.919 -0.508 -1.48 -- -0.264 20.9 8.38 733 -- --
30.58 0.258 12 0.113 1.01 -0.393 -- 2.17 -0.245 20.3 5.5 981 -- --
36.8 0.283 12 0.17 0.912 -0.542 -- -- -0.252 21.1 7.32 728 -- --
47.01 0.319 11.9 0.0204 -- -1.4 -- 0.978 -0.228 -- 3.67 910 -- --
31.09 0.261 12 0.117 1.23 -- -1.56 -- -0.241 20.2 -- -- -- --
38.5 0.291 12 0.162 1.23 -- -- -- -0.242 20.1 -- -- -- --
46.66 0.318 11.9 0.0444 -- -1.74 -- -- -0.299 -- 2.03 976 -- --
37.56 0.285 12 -- 0.947 -0.511 -- -- -0.275 21.1 6.222 724 -- --
121.94 0.516 11.9 0.152 -- -- -- -- -0.256 -- -- -- -- --
39.19 0.293 12 -- 1.23 -- -- -- -0.26 20.2 -- -- -- --
46.18 0.317 12 -- -- -1.75 -- -- -0.351 -- 2.26 973 -- --
122.56 0.517 11.9 -- -- -- -- -- -0.273 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 26.07 wind 1 43200 < th dose dependent rect. 6 2
2 26.14 humidity 60 43200 < th dose dependent rect. 11 6
3 26.18 humidity 60 43200 < th dose dependent rect. 12 4
6 26.20 humidity 60 43200 < th dose dependent rect. 19 22
7 26.21 humidity 60 43200 < th dose dependent rect. 13 2
11 26.22 humidity 60 43200 < th dose dependent rect. 11 22
13 26.23 humidity 60 43200 < th dose dependent rect. 5 12
21 26.24 humidity 60 43200 < th dose dependent rect. 8 9
24 26.24 humidity 60 43200 < th dose dependent rect. 11 20
26 26.25 humidity 60 43200 < th dose dependent rect. 11 17
31 26.26 humidity 60 43200 < th dose dependent rect. 11 11
40 26.28 humidity 60 43200 < th dose dependent sin 22 NA
50 26.29 humidity 60 43200 < th dose dependent no NA NA
59 26.29 humidity 60 43200 < th dose dependent rect. 4 19
63 26.29 humidity 60 43200 < th dose dependent rect. 1 21
67 26.29 humidity 60 43200 < th dose dependent rect. 8 21
79 26.29 humidity 60 43200 < th dose dependent rect. 6 23
87 26.30 humidity 60 43200 < th dose dependent rect. 8 14
183 26.33 humidity 60 43200 < th dose dependent rect. 13 23
193 26.36 humidity 70 43200 < th dose dependent rect. 9 1
195 26.36 humidity 60 43200 < th dose dependent rect. 16 23
242 26.58 humidity 70 43200 < th dose dependent rect. 21 14
243 26.59 humidity 60 43200 > th dose independent rect. 8 4
245 26.59 humidity 70 43200 < th dose dependent rect. 8 3
248 26.60 humidity 60 43200 > th dose independent rect. 21 15
262 26.64 humidity 60 43200 < th dose independent sin 8 NA
263 26.64 wind 1 43200 < th dose independent rect. 6 2
283 26.67 humidity 60 43200 > th dose independent rect. 3 9
291 26.68 humidity 70 43200 < th dose dependent rect. 3 8
298 26.70 humidity 60 43200 < th dose independent rect. 11 1
311 26.73 humidity 50 43200 > th dose independent rect. 14 19
312 26.74 humidity 50 43200 > th dose independent rect. 14 3
323 26.80 humidity 60 43200 > th dose independent sin 9 NA
324 26.80 humidity 50 43200 > th dose independent rect. 15 1
325 26.80 humidity 50 43200 > th dose independent rect. 14 8
330 26.80 humidity 60 43200 < th dose independent rect. 19 18
340 26.84 humidity 60 43200 < th dose independent rect. 8 5
348 26.87 humidity 60 43200 < th dose independent rect. 3 10
365 26.91 wind 1 43200 > th dose independent rect. 6 2
383 26.94 humidity 60 43200 < th dose independent rect. 9 3
384 26.94 humidity 60 43200 < th dose independent rect. 16 20
385 26.94 humidity 60 43200 < th dose dependent sin 10 NA
399 27.00 humidity 50 43200 > th dose independent sin 14 NA
442 27.10 wind 9 43200 > th dose dependent rect. 13 1
452 27.17 wind 1 43200 < th dose dependent rect. 6 4
454 27.19 humidity 70 43200 < th dose independent rect. 19 14
456 27.21 humidity 80 4320 > th dose independent rect. 9 1
457 27.23 humidity 70 43200 > th dose independent rect. 19 14
459 27.23 radiation 40 43200 > th dose independent rect. 14 19
482 27.32 wind 1 43200 > th dose independent rect. 9 2
485 27.33 radiation 10 43200 > th dose independent rect. 16 1
489 27.34 wind 1 43200 < th dose independent rect. 2 17
510 27.40 radiation 10 43200 > th dose independent rect. 16 15
514 27.41 radiation 10 43200 > th dose independent rect. 15 17
518 27.42 humidity 80 4320 < th dose independent rect. 9 2
525 27.43 humidity 50 43200 < th dose independent rect. 14 19
535 27.46 radiation 30 43200 > th dose independent rect. 14 2
536 27.46 radiation 20 43200 < th dose independent rect. 4 2
537 27.46 wind 1 43200 > th dose independent rect. 4 4
545 27.47 wind 9 43200 < th dose independent rect. 13 1
585 27.49 wind 3 4320 > th dose dependent rect. 14 1
591 27.50 wind 1 43200 < th dose independent rect. 4 4
598 27.51 humidity 60 14400 < th dose independent rect. 16 1
606 27.51 humidity 50 43200 < th dose independent rect. 14 8
624 27.51 radiation 10 43200 < th dose dependent rect. 14 5
718 27.55 humidity 50 43200 < th dose independent rect. 14 5
737 27.56 humidity 50 43200 < th dose independent sin 13 NA
738 27.56 humidity 70 43200 < th dose independent rect. 8 1
744 27.56 radiation 10 43200 < th dose dependent sin 16 NA
777 27.61 temperature 15 43200 < th dose dependent rect. 2 1
781 27.62 radiation 10 43200 > th dose independent sin 13 NA
794 27.63 temperature 15 43200 < th dose dependent rect. 1 8
808 27.64 temperature 15 43200 < th dose dependent rect. 2 6
820 27.65 radiation 10 43200 < th dose dependent rect. 16 1
837 27.66 radiation 30 43200 > th dose independent sin 13 NA
858 27.67 humidity 80 4320 < th dose dependent rect. 11 1
884 27.67 radiation 10 43200 < th dose dependent rect. 9 20
887 27.68 wind 5 4320 > th dose independent rect. 14 1
888 27.68 radiation 20 43200 < th dose independent rect. 19 11
891 27.68 temperature 15 43200 < th dose dependent sin 7 NA
892 27.68 temperature 15 43200 < th dose dependent sin 5 NA
894 27.68 temperature 15 43200 < th dose dependent rect. 5 1
944 27.69 radiation 10 43200 < th dose dependent rect. 9 10