Os06g0258900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ketose-bisphosphate aldolase, class-II family protein.
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Os06g0258900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ketose-bisphosphate aldolase, class-II family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.38 | 0.255 | 10.7 | -0.24 | 0.118 | -1.9 | -0.346 | 1.53 | 0.214 | 20.3 | 21.38 | 250 | -- | -- |
| 31.05 | 0.26 | 10.7 | -0.525 | 0.0958 | -1.81 | -0.324 | -- | 0.132 | 20.4 | 21 | 240 | -- | -- |
| 29.74 | 0.254 | 10.7 | -0.236 | 0.116 | -1.92 | -- | 1.47 | 0.213 | 19.7 | 21.4 | 242 | -- | -- |
| 31.22 | 0.26 | 10.7 | -0.515 | 0.108 | -1.78 | -- | -- | 0.131 | 20.9 | 21.25 | 252 | -- | -- |
| 30.13 | 0.256 | 10.7 | -0.228 | -- | -1.89 | -- | 1.58 | 0.203 | -- | 21.34 | 212 | -- | -- |
| 87.29 | 0.438 | 10.8 | -0.91 | 0.678 | -- | 0.195 | -- | -0.168 | 4.16 | -- | -- | -- | -- |
| 87.39 | 0.438 | 10.8 | -0.912 | 0.679 | -- | -- | -- | -0.169 | 4.12 | -- | -- | -- | -- |
| 31.58 | 0.262 | 10.7 | -0.52 | -- | -1.77 | -- | -- | 0.128 | -- | 21.1 | 224 | -- | -- |
| 37.62 | 0.286 | 10.7 | -- | 0.143 | -1.95 | -- | -- | 0.22 | 19.2 | 20.72 | 252 | -- | -- |
| 112.43 | 0.495 | 10.8 | -0.885 | -- | -- | -- | -- | -0.151 | -- | -- | -- | -- | -- |
| 109.33 | 0.489 | 10.8 | -- | 0.662 | -- | -- | -- | -0.0675 | 4.14 | -- | -- | -- | -- |
| 38.28 | 0.288 | 10.7 | -- | -- | -1.89 | -- | -- | 0.206 | -- | 20.63 | 226 | -- | -- |
| 133.09 | 0.538 | 10.8 | -- | -- | -- | -- | -- | -0.0528 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.46 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 3 | 30.30 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 4 | 30.56 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 5 | 30.71 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 11 | 31.13 | temperature | 20 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 13 | 31.41 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 7 |
| 14 | 31.42 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 5 |
| 16 | 31.48 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 17 | 31.48 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 5 |
| 18 | 31.48 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 23 | 31.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 14 |
| 25 | 31.61 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 7 |
| 39 | 31.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 7 |
| 41 | 31.75 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 44 | 31.76 | temperature | 20 | 1440 | > th | dose dependent | sin | 3 | NA |
| 47 | 31.78 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 78 | 31.97 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 80 | 31.98 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 100 | 32.05 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 106 | 32.07 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 112 | 32.09 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 137 | 32.17 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 178 | 32.22 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 4 |
| 221 | 32.30 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 252 | 32.34 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 283 | 32.38 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 299 | 32.41 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 311 | 32.43 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 15 |
| 334 | 32.47 | temperature | 20 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 339 | 32.48 | temperature | 20 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 341 | 32.48 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 351 | 32.49 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 386 | 32.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 394 | 32.55 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 437 | 32.63 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 449 | 32.66 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 459 | 32.67 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 464 | 32.67 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 482 | 32.69 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 483 | 32.70 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 15 | 4 |
| 495 | 32.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 571 | 32.83 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 583 | 32.84 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 609 | 32.86 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 610 | 32.86 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 619 | 32.86 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 621 | 32.87 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 3 |
| 655 | 32.93 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 710 | 32.97 | temperature | 20 | 14400 | > th | dose dependent | sin | 14 | NA |
| 769 | 33.05 | temperature | 25 | 4320 | > th | dose independent | sin | 3 | NA |
| 770 | 33.05 | humidity | 90 | 43200 | > th | dose dependent | sin | 17 | NA |
| 779 | 33.06 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 850 | 33.14 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 20 |
| 889 | 33.20 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 911 | 33.22 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 934 | 33.24 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 945 | 33.26 | temperature | 25 | 4320 | < th | dose independent | sin | 3 | NA |
| 960 | 33.27 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 19 |
| 976 | 33.28 | humidity | 90 | 43200 | > th | dose independent | sin | 17 | NA |
| 983 | 33.29 | humidity | 90 | 43200 | < th | dose independent | sin | 17 | NA |