BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0236300 Os06g0236300|AK119955
(189 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0236300 Conserved hypothetical protein 285 1e-77
Os02g0741700 Conserved hypothetical protein 132 2e-31
Os09g0381600 Conserved hypothetical protein 132 2e-31
Os08g0420700 Conserved hypothetical protein 124 5e-29
Os02g0607400 100 4e-22
Os03g0200200 Conserved hypothetical protein 93 1e-19
Os03g0246150 80 9e-16
Os07g0602050 70 9e-13
>Os06g0236300 Conserved hypothetical protein
Length = 189
Score = 285 bits (729), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 146/189 (77%), Positives = 146/189 (77%)
Query: 1 MGNCQAAEAATVVVQHPGGRVERLYWATTAAEVMRANPGHYVALVTLRVAEEKRXXXXXX 60
MGNCQAAEAATVVVQHPGGRVERLYWATTAAEVMRANPGHYVALVTLRVAEEKR
Sbjct: 1 MGNCQAAEAATVVVQHPGGRVERLYWATTAAEVMRANPGHYVALVTLRVAEEKRPPPPPP 60
Query: 61 XXXARAEXXXXXXXXXXXXXXKLLKPRDTLLLGQAYRLITVDEVTRALQXXXXXXXXXXX 120
ARAE KLLKPRDTLLLGQAYRLITVDEVTRALQ
Sbjct: 61 PPPARAERRGTGTGTVRVTRVKLLKPRDTLLLGQAYRLITVDEVTRALQAKKEEKSRRAA 120
Query: 121 XQHHHLESKPXXXXXXXXGVRINSGGDDHTQLDENLDQHDRDGQRSSSATHSRHRQWRPS 180
QHHHLESKP GVRINSGGDDHTQLDENLDQHDRDGQRSSSATHSRHRQWRPS
Sbjct: 121 AQHHHLESKPAAAAAVAAGVRINSGGDDHTQLDENLDQHDRDGQRSSSATHSRHRQWRPS 180
Query: 181 LHSIAEVRS 189
LHSIAEVRS
Sbjct: 181 LHSIAEVRS 189
>Os02g0741700 Conserved hypothetical protein
Length = 166
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/109 (62%), Positives = 78/109 (71%), Gaps = 12/109 (11%)
Query: 1 MGNCQAAEAATVVVQHPGGRVERLYWATTAAEVMRANPGHYVALVTLRVAEEKRXXXXXX 60
MGNCQAAEAA VV+QHPGGRVERL W+T+AAEVMRANPGHY+ALVTLRVAEE++
Sbjct: 1 MGNCQAAEAAAVVIQHPGGRVERLCWSTSAAEVMRANPGHYIALVTLRVAEERQDGDGGA 60
Query: 61 XXXARAEXXXXXXXXXXXXXXKLLKPRDTLLLGQAYRLITVDEVTRALQ 109
R KLLKP++TLLLG AYRLIT EVT+A+Q
Sbjct: 61 RRTVR------------LTRVKLLKPKETLLLGHAYRLITTHEVTKAVQ 97
>Os09g0381600 Conserved hypothetical protein
Length = 208
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/191 (45%), Positives = 98/191 (51%), Gaps = 8/191 (4%)
Query: 1 MGNCQAAEAATVVVQHPGGRVERLYWATTAAEVMRANPGHYVALVTLRVAEEKRXXXXXX 60
MGNCQAAEAA VV+QHPGG+VERLYW TTAA+VMRANPGHYVALV LR++ +K
Sbjct: 1 MGNCQAAEAAAVVIQHPGGKVERLYWPTTAADVMRANPGHYVALVILRISADKAASAAAA 60
Query: 61 --XXXARAEXXXXXXXXXXXXXXKLLKPRDTLLLGQAYRLITVDEVTRALQXXXXXXX-- 116
KLLKP+DTLLLGQ YRLIT EVT+AL+
Sbjct: 61 GDNKTNAGGATGGGGGGAKITRVKLLKPKDTLLLGQVYRLITSQEVTKALRARKNEKMRR 120
Query: 117 -XXXXXQHHHLESKPXXXXXXXXGVRINSGGDDHTQLDENLDQHDRDGQRSSSATHSRHR 175
QH L S DD D D+H G + A R R
Sbjct: 121 CEAIRQQHEQLRRGDPLAGVAEEEEEEESASDDQ---DGKRDRHRSSGAGAPPAAGGRGR 177
Query: 176 QWRPSLHSIAE 186
WRPSL SI+E
Sbjct: 178 HWRPSLQSISE 188
>Os08g0420700 Conserved hypothetical protein
Length = 189
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 92/193 (47%), Gaps = 8/193 (4%)
Query: 1 MGNCQAAEAATVVVQHPGGRVERLYWATTAAEVMRANPGHYVALVTLRVA----EEKRXX 56
MGNCQAAE A VV+QHPGG+VERLYW TAA+VMR+NPGHYVALV LRV+
Sbjct: 1 MGNCQAAEVAAVVIQHPGGKVERLYWPATAADVMRSNPGHYVALVLLRVSASSSGGGGGG 60
Query: 57 XXXXXXXARAEXXXXXXXXXXXXXXKLLKPRDTLLLGQAYRLITVDEVTRALQXXXXXXX 116
A KLLKP++TLLLG+ YRL+T EVT+ALQ
Sbjct: 61 KAEHSAVGAAVGDESGGAAAKITKIKLLKPKETLLLGKVYRLVTSQEVTKALQARRQEKM 120
Query: 117 XXXXXQHHHLESKPXXXXXXXXGVRINSGGDDHTQLDENLDQHDRDGQRSSSATHSRHRQ 176
H +P G D + D+H G +
Sbjct: 121 RRCKEVTDHHHRQPQTGDSAAAGEEQRRPSDHQERKPAEKDRHRSSGGGGGGRGRN---- 176
Query: 177 WRPSLHSIAEVRS 189
WRPSL SI+E S
Sbjct: 177 WRPSLQSISESAS 189
>Os02g0607400
Length = 971
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/116 (56%), Positives = 68/116 (58%), Gaps = 10/116 (8%)
Query: 36 ANPGHYVALVTLRVAEEKRXXXXXXXXXARAEXXXXXXXXXXXXXXKLLKPRDTLLLGQA 95
ANPG+Y+ALVTLRVAEE R ARAE KLLKPRDTLLLGQA
Sbjct: 850 ANPGNYIALVTLRVAEEMRPPLPPP---ARAERHGTGTVRVTRV--KLLKPRDTLLLGQA 904
Query: 96 YRLITVDEVTRALQXXXXXXXXXXXXQHHHLESKPXXXXXXXXGVRINSGGDDHTQ 151
YRLITVDEVTR LQ Q HHLESKP GV INS GDDHT+
Sbjct: 905 YRLITVDEVTRVLQAKKEEKSRRAAAQ-HHLESKP----AGAAGVGINSSGDDHTR 955
>Os03g0200200 Conserved hypothetical protein
Length = 215
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 59/109 (54%), Gaps = 15/109 (13%)
Query: 1 MGNCQAAEAATVVVQHPGG-RVERLYWATTAAEVMRANPGHYVALVTLRVAEEKRXXXXX 59
MGNCQAAE ATVV+QHPGG R ER YWA +A VM ANPGHYVA V
Sbjct: 1 MGNCQAAEVATVVIQHPGGGRTERAYWAMSAGAVMAANPGHYVAAVITSPPAAGASSATP 60
Query: 60 XXXXARAEXXXXXXXXXXXXXXKLLKPRDTLLLGQAYRLITVDEVTRAL 108
+ KLL+P DTLLLG+ YRL++ +EV R
Sbjct: 61 AAAPVK--------------HLKLLRPDDTLLLGRVYRLVSFEEVLREF 95
>Os03g0246150
Length = 105
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/70 (64%), Positives = 45/70 (64%), Gaps = 5/70 (7%)
Query: 82 KLLKPRDTLLLGQAYRLITVDEVTRALQXXXXXXXXXXXXQHHHLESKPXXXXXXXXGVR 141
KLLKPRDTLLLGQ YRLITVDEVTR LQ Q HHLESKP GV
Sbjct: 25 KLLKPRDTLLLGQPYRLITVDEVTRVLQAKKEEKSRRAAAQ-HHLESKP----AGAAGVG 79
Query: 142 INSGGDDHTQ 151
INS GDDHTQ
Sbjct: 80 INSSGDDHTQ 89
>Os07g0602050
Length = 299
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 36 ANPGHYVALVTLRVAEEKRXXXXXXXXXARAEXXXXXXXXXXXXXXKLLKPRDTLLLGQA 95
ANPGHY+ALVTLRVAEE R ARAE KLLKPRD LLLGQA
Sbjct: 62 ANPGHYIALVTLRVAEEMRPPPPPPP--ARAEQHGTGTVRVTRV--KLLKPRDALLLGQA 117
Query: 96 YRLITVDE 103
YRLITVDE
Sbjct: 118 YRLITVDE 125
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.129 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,956,652
Number of extensions: 139093
Number of successful extensions: 466
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 9
Length of query: 189
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 94
Effective length of database: 12,075,471
Effective search space: 1135094274
Effective search space used: 1135094274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)