BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0232200 Os06g0232200|Os06g0232200
(401 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0232200 Ribokinase family protein 662 0.0
Os08g0113100 Similar to Fructokinase (Fragment) 356 1e-98
Os01g0894300 Similar to Fructokinase 1 350 1e-96
Os01g0851000 PfkB domain containing protein 121 1e-27
Os03g0602600 PfkB domain containing protein 87 3e-17
>Os06g0232200 Ribokinase family protein
Length = 401
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/401 (83%), Positives = 336/401 (83%)
Query: 1 MALHAAXXXXXXFTAGRLPTTSRRPCFSAGRIFRCSXXXXXXXXXXXXXXXXXXTSSAVC 60
MALHAA FTAGRLPTTSRRPCFSAGRIFRCS TSSAVC
Sbjct: 1 MALHAAPPPPPPFTAGRLPTTSRRPCFSAGRIFRCSLPAAAARPRNAAFLAPLRTSSAVC 60
Query: 61 TKAVSNSDGTPGTSSSPHVVCFGELLIDFVPTVNGVSLAEASAFKKXXXXXXXXXXXXXX 120
TKAVSNSDGTPGTSSSPHVVCFGELLIDFVPTVNGVSLAEASAFKK
Sbjct: 61 TKAVSNSDGTPGTSSSPHVVCFGELLIDFVPTVNGVSLAEASAFKKAPGGAPANVAVGIA 120
Query: 121 RLGGSSAFIGKVGDDEFGYMLADILKENNVNNQGLLFDAHARTALAFVTLRNDGEREFMF 180
RLGGSSAFIGKVGDDEFGYMLADILKENNVNNQGLLFDAHARTALAFVTLRNDGEREFMF
Sbjct: 121 RLGGSSAFIGKVGDDEFGYMLADILKENNVNNQGLLFDAHARTALAFVTLRNDGEREFMF 180
Query: 181 YRNPSAXXXXXXXXXXXXXIRKAKIFHHGSISLITEPCXXXXXXXXXXXXXXGVLISYDP 240
YRNPSA IRKAKIFHHGSISLITEPC GVLISYDP
Sbjct: 181 YRNPSADMLLEEKELDLDLIRKAKIFHHGSISLITEPCKTAHIAAAKAAKDAGVLISYDP 240
Query: 241 NLRLPLWSSADDARDGILSIWETADVIKISEEEVSFLTKGEDPYDDSVIKKLMHPNLKLL 300
NLRLPLWSSADDARDGILSIWETADVIKISEEEVSFLTKGEDPYDDSVIKKLMHPNLKLL
Sbjct: 241 NLRLPLWSSADDARDGILSIWETADVIKISEEEVSFLTKGEDPYDDSVIKKLMHPNLKLL 300
Query: 301 LVTEGPEGCRYYSKEFNGRVGGLKVNAVDTTGAGDAFVAGILSQLSVDFSLLQDEGRLKE 360
LVTEGPEGCRYYSKEFNGRVGGLKVNAVDTTGAGDAFVAGILSQLSVDFSLLQDEGRLKE
Sbjct: 301 LVTEGPEGCRYYSKEFNGRVGGLKVNAVDTTGAGDAFVAGILSQLSVDFSLLQDEGRLKE 360
Query: 361 ALKFANVCGALTVTERGAIPALPTRQQVVDALTKGNPALAL 401
ALKFANVCGALTVTERGAIPALPTRQQVVDALTKGNPALAL
Sbjct: 361 ALKFANVCGALTVTERGAIPALPTRQQVVDALTKGNPALAL 401
>Os08g0113100 Similar to Fructokinase (Fragment)
Length = 336
Score = 356 bits (914), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 178/316 (56%), Positives = 220/316 (69%), Gaps = 1/316 (0%)
Query: 79 VVCFGELLIDFVPTVNGVSLAEASAFKKXXXXXXXXXXXXXXRLGGSSAFIGKVGDDEFG 138
VV FGE+LIDFVP V GVSLAE+ F K +LGGSSAF+GK GDDEFG
Sbjct: 19 VVSFGEMLIDFVPDVAGVSLAESGGFVKAPGGAPANVACAISKLGGSSAFVGKFGDDEFG 78
Query: 139 YMLADILKENNVNNQGLLFDAHARTALAFVTLRNDGEREFMFYRNPSAXXXXXXXXXXXX 198
+ML DILK+N VN +G LFD HARTALAFVTL+++GEREFMFYRNPSA
Sbjct: 79 HMLVDILKKNGVNAEGCLFDEHARTALAFVTLKSNGEREFMFYRNPSADMLLTEAELNLD 138
Query: 199 XIRKAKIFHHGSISLITEPCXXXXXXXXXXXXXXGVLISYDPNLRLPLWSSADDARDGIL 258
IR+AKIFH+GSISLITEPC G+L SYDPN+RLPLW S D AR GIL
Sbjct: 139 LIRRAKIFHYGSISLITEPCRSAHVAAMRAAKSAGILCSYDPNVRLPLWPSEDAARAGIL 198
Query: 259 SIWETADVIKISEEEVSFLTKGEDPYDDSVIKKLMHPNLKLLLVTEGPEGCRYYSKEFNG 318
SIW+ AD IK+S++EV+FLT+G D D+ + L LKLL+VT+G +GCRY++K+F G
Sbjct: 199 SIWKEADFIKVSDDEVAFLTQG-DANDEKNVLSLWFDGLKLLIVTDGEKGCRYFTKDFKG 257
Query: 319 RVGGLKVNAVDTTGAGDAFVAGILSQLSVDFSLLQDEGRLKEALKFANVCGALTVTERGA 378
V G VN VDTTGAGDAFV +L ++ D S+ +E +L+EALKF+N CGA+ T++GA
Sbjct: 258 SVPGFSVNTVDTTGAGDAFVGSLLVNVAKDDSIFHNEEKLREALKFSNACGAICTTKKGA 317
Query: 379 IPALPTRQQVVDALTK 394
IPALPT + ++K
Sbjct: 318 IPALPTVAVAQELISK 333
>Os01g0894300 Similar to Fructokinase 1
Length = 323
Score = 350 bits (897), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 175/314 (55%), Positives = 218/314 (69%), Gaps = 1/314 (0%)
Query: 76 SPHVVCFGELLIDFVPTVNGVSLAEASAFKKXXXXXXXXXXXXXXRLGGSSAFIGKVGDD 135
S VV FGE+LIDFVPTV GVSLAEA AF K RLGG +AF+GK+GDD
Sbjct: 5 SELVVSFGEMLIDFVPTVAGVSLAEAPAFVKAPGGAPANVAIAVARLGGGAAFVGKLGDD 64
Query: 136 EFGYMLADILKENNVNNQGLLFDAHARTALAFVTLRNDGEREFMFYRNPSAXXXXXXXXX 195
EFG MLA IL++N V++ G++FDA ARTALAFVTLR DGEREFMFYRNPSA
Sbjct: 65 EFGRMLAAILRDNGVDDGGVVFDAGARTALAFVTLRADGEREFMFYRNPSADMLLTHAEL 124
Query: 196 XXXXIRKAKIFHHGSISLITEPCXXXXXXXXXXXXXXGVLISYDPNLRLPLWSSADDARD 255
I++A +FH+GSISLI EPC G L+SYDPNLR LW S ++AR
Sbjct: 125 NVELIKRAAVFHYGSISLIAEPCRSAHLRAMEIAKEAGALLSYDPNLREALWPSREEART 184
Query: 256 GILSIWETADVIKISEEEVSFLTKGEDPYDDSVIKKLMHPNLKLLLVTEGPEGCRYYSKE 315
ILSIW+ AD++K+SE E+ FLT G D +D V+ KL P +KLLLVT G +GC+YY+++
Sbjct: 185 KILSIWDQADIVKVSEVELEFLT-GIDSVEDDVVMKLWRPTMKLLLVTLGDQGCKYYARD 243
Query: 316 FNGRVGGLKVNAVDTTGAGDAFVAGILSQLSVDFSLLQDEGRLKEALKFANVCGALTVTE 375
F G V KV VDTTGAGDAFV +L ++ D S LQD+ +L+EA+KFAN CGA+T T+
Sbjct: 244 FRGAVPSYKVQQVDTTGAGDAFVGALLRRIVQDPSSLQDQKKLEEAIKFANACGAITATK 303
Query: 376 RGAIPALPTRQQVV 389
+GAIP+LPT +V+
Sbjct: 304 KGAIPSLPTEVEVL 317
>Os01g0851000 PfkB domain containing protein
Length = 531
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/360 (28%), Positives = 146/360 (40%), Gaps = 52/360 (14%)
Query: 77 PHVVCFGELLIDFVPTVNGVSLA--------------EASAFKKXXXXXXXXXXXXXXRL 122
P V CFG +FVPTV E F + RL
Sbjct: 155 PLVCCFGAPRWEFVPTVRVSDRQMHPDIYSTWLHLQWEPPEFARAPGSAASNVAIALTRL 214
Query: 123 GGSSAFIGKVGDDEFGYMLADILKENNVNNQGLLFDAHARTALAFVTL----RNDGE--- 175
GG +A +GKVGDD+FG L + V + + FD A TA A + + R DG
Sbjct: 215 GGRAAVLGKVGDDDFGRELVYRMNCERVQTRAIRFDDGAATATARMKVGFRDREDGSGGT 274
Query: 176 REFMFYRNPSAXXXXXXXXXXXXXIRKAKIFHHGSISLITEPCXXXXXXXXXXXXXXGVL 235
R +A +++A++FH S L+T G
Sbjct: 275 RLVAETVKSAAEDSLSKAEINVDVLKEARVFHFNSEVLLTPSMESTLFRAIELSKKFGSK 334
Query: 236 ISYDPNLRLPLWSSADDARDGILSIWETADVIKISEEEVSFLTKGE-------DP----- 283
I +D NL LPLW S D+ ++ I W AD+I++S +E+ FL E +P
Sbjct: 335 IFFDLNLPLPLWRSRDETKELINKAWNEADIIEVSRDELEFLLDHEYYQYKRANPPQYYL 394
Query: 284 --------------YDDSVIKKLMHPNLKLLLVTEGPEGCRYYSKEFNGRVGG-----LK 324
Y I + H +KLLLVT G YY+ +F+G V G +
Sbjct: 395 DGFHLTRNWPQYYHYTPEEIAPIWHDGIKLLLVTYGTLRIHYYTPKFHGCVIGTEDALIT 454
Query: 325 VNAVDTTGAGDAFVAGILSQLSVDFSLLQDEGRLKEALKFANVCGALTVTERGAIPALPT 384
D TG+GDA VA + +L+ + +D+ L+ L+FA G ++ GA+ PT
Sbjct: 455 PYTTDRTGSGDAVVAAAIRKLTSCPEMYEDQDTLERNLRFAVAAGIISQWTIGAVRGFPT 514
>Os03g0602600 PfkB domain containing protein
Length = 216
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 82/166 (49%), Gaps = 20/166 (12%)
Query: 200 IRKAKIFHHGSISLITEPCXXXXXXXXXXXXXXGVLISYDPNLRLPLWSSADDARDGILS 259
+ +AK+F++ S +L+ G + +D NL LPLWSS+ + + +
Sbjct: 38 LMQAKMFYYNSSALLEPTTRSSLSKAIEVSKKFGGVTFFDLNLPLPLWSSSKETKSLVKE 97
Query: 260 IWETADVIKISEEEVSFL----------TKGEDP-----YDDSVIKKLMHPNLKLLLVTE 304
WE AD+I+I+++E+ FL TK D Y V+ KL H NLK+L VT
Sbjct: 98 AWEAADIIEITKQELEFLCGIKPSEKFGTKDNDKSKFTHYSPEVVTKLWHENLKVLFVTN 157
Query: 305 GPEGCRYYSKEFNGRVGGLKVNAV-----DTTGAGDAFVAGILSQL 345
G YY+KE +G V G + + D + +GDA VAG S +
Sbjct: 158 GTSKIHYYTKEHDGWVRGTEDAPITPFTGDMSQSGDAIVAGTASDV 203
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,401,244
Number of extensions: 398401
Number of successful extensions: 813
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 807
Number of HSP's successfully gapped: 5
Length of query: 401
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 298
Effective length of database: 11,657,759
Effective search space: 3474012182
Effective search space used: 3474012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)