Os06g0232200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribokinase family protein.
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Os06g0232200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribokinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.64 | 0.268 | 12.6 | -1.16 | 1.09 | -1.03 | -0.0852 | -0.38 | -0.681 | 12.5 | 27.94 | 156 | -- | -- |
| 32.82 | 0.267 | 12.6 | -1.21 | 1.1 | -1 | 0.0296 | -- | -0.69 | 12.6 | 28.04 | 156 | -- | -- |
| 32.66 | 0.266 | 12.6 | -1.18 | 1.09 | -1.03 | -- | -0.32 | -0.683 | 12.5 | 27.91 | 157 | -- | -- |
| 32.8 | 0.267 | 12.6 | -1.23 | 1.09 | -1.02 | -- | -- | -0.696 | 12.5 | 28.09 | 156 | -- | -- |
| 80.22 | 0.419 | 12.6 | -1.43 | -- | -2.32 | -- | -0.0462 | -0.811 | -- | 35 | 8 | -- | -- |
| 47.13 | 0.322 | 12.6 | -0.973 | 1.33 | -- | 0.0295 | -- | -0.48 | 13.1 | -- | -- | -- | -- |
| 47.13 | 0.321 | 12.6 | -0.972 | 1.33 | -- | -- | -- | -0.48 | 13.1 | -- | -- | -- | -- |
| 80.15 | 0.417 | 12.6 | -1.44 | -- | -2.3 | -- | -- | -0.815 | -- | 89.67 | 2 | -- | -- |
| 68.36 | 0.387 | 12.6 | -- | 1.2 | -0.484 | -- | -- | -0.461 | 13 | 28.09 | 156 | -- | -- |
| 156.46 | 0.584 | 12.6 | -1.02 | -- | -- | -- | -- | -0.506 | -- | -- | -- | -- | -- |
| 72.04 | 0.397 | 12.5 | -- | 1.34 | -- | -- | -- | -0.372 | 13.2 | -- | -- | -- | -- |
| 131.7 | 0.536 | 12.6 | -- | -- | -1.87 | -- | -- | -0.602 | -- | 89.67 | 2 | -- | -- |
| 184.06 | 0.633 | 12.6 | -- | -- | -- | -- | -- | -0.393 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.03 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 10 | 30.41 | temperature | 30 | 30 | < th | dose dependent | sin | 4 | NA |
| 18 | 30.56 | temperature | 15 | 90 | > th | dose dependent | sin | 5 | NA |
| 163 | 32.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 193 | 32.51 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 197 | 32.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 228 | 32.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 246 | 32.86 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 259 | 32.93 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 279 | 33.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 290 | 33.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 300 | 33.14 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 340 | 33.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 21 |
| 344 | 33.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 383 | 33.38 | temperature | 30 | 1440 | < th | dose dependent | sin | 23 | NA |
| 465 | 33.53 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 501 | 33.56 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 502 | 33.56 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 524 | 33.58 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 526 | 33.59 | temperature | 10 | 1440 | > th | dose dependent | sin | 0 | NA |
| 536 | 33.59 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 562 | 33.61 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 575 | 33.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 609 | 33.66 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 674 | 33.74 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 686 | 33.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 16 |
| 690 | 33.75 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 737 | 33.79 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 749 | 33.80 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 759 | 33.80 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 794 | 33.84 | temperature | 25 | 1440 | > th | dose independent | sin | 22 | NA |
| 836 | 33.87 | temperature | 25 | 1440 | < th | dose independent | sin | 22 | NA |
| 865 | 33.88 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 872 | 33.89 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 902 | 33.91 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 995 | 33.96 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 1000 | 33.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 7 |