Os08g0113100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Fructokinase (Fragment).
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Os08g0113100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Fructokinase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.82 | 0.304 | 11.4 | 0.757 | 0.525 | 0.384 | 0.442 | -1.68 | 0.298 | 16.5 | 10 | 7082 | -- | -- |
| 45.27 | 0.313 | 11.4 | 0.757 | 0.523 | 0.45 | 0.437 | -- | 0.298 | 16.5 | 9.999 | 31778 | -- | -- |
| 42.32 | 0.303 | 11.4 | 0.757 | 0.525 | 0.385 | -- | -1.67 | 0.298 | 16.3 | 10 | 7082 | -- | -- |
| 44.07 | 0.309 | 11.4 | 0.737 | 0.555 | 0.486 | -- | -- | 0.27 | 16.4 | 15.93 | 45479 | -- | -- |
| 57.17 | 0.352 | 11.4 | 0.74 | -- | 0.396 | -- | -1.53 | 0.31 | -- | 9.991 | 7060 | -- | -- |
| 50.13 | 0.332 | 11.4 | 0.886 | 0.525 | -- | 0.401 | -- | 0.266 | 16.4 | -- | -- | -- | -- |
| 50.54 | 0.333 | 11.4 | 0.889 | 0.526 | -- | -- | -- | 0.268 | 16.2 | -- | -- | -- | -- |
| 59.21 | 0.358 | 11.4 | 0.649 | -- | 0.531 | -- | -- | 0.237 | -- | 16.73 | 44442 | -- | -- |
| 48.65 | 0.325 | 11.4 | -- | 0.535 | 0.93 | -- | -- | 0.076 | 16.1 | 30 | 47520 | -- | -- |
| 65.51 | 0.378 | 11.4 | 0.868 | -- | -- | -- | -- | 0.254 | -- | -- | -- | -- | -- |
| 71.38 | 0.395 | 11.4 | -- | 0.509 | -- | -- | -- | 0.169 | 16.3 | -- | -- | -- | -- |
| 60.67 | 0.363 | 11.5 | -- | -- | 0.96 | -- | -- | 0.0238 | -- | 50 | 47520 | -- | -- |
| 85.39 | 0.431 | 11.4 | -- | -- | -- | -- | -- | 0.158 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.23 | radiation | 10 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 14 | 40.38 | radiation | 30 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 30 | 40.51 | radiation | 20 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 36 | 40.52 | radiation | 20 | 43200 | > th | dose independent | sin | 9 | NA |
| 79 | 40.60 | radiation | 1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 80 | 40.62 | radiation | 1 | 4320 | < th | dose dependent | rect. | 2 | 3 |
| 83 | 40.63 | radiation | 40 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 102 | 40.65 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 120 | 40.66 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 137 | 40.67 | radiation | 1 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 233 | 40.77 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 239 | 40.79 | radiation | 40 | 43200 | > th | dose independent | sin | 8 | NA |
| 243 | 40.79 | radiation | 10 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 248 | 40.80 | radiation | 10 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 284 | 40.80 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 392 | 40.87 | radiation | 30 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 416 | 40.88 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 433 | 40.89 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 456 | 40.90 | radiation | 40 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 558 | 40.92 | humidity | 70 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 644 | 40.94 | radiation | 40 | 43200 | > th | dose independent | no | NA | NA |
| 784 | 40.94 | radiation | 10 | 43200 | > th | dose dependent | sin | 8 | NA |
| 804 | 40.95 | humidity | 60 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 823 | 40.95 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 3 |
| 902 | 40.97 | radiation | 30 | 43200 | < th | dose dependent | sin | 7 | NA |