Os01g0851000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PfkB domain containing protein.
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Os01g0851000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : PfkB domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 177.74 | 0.626 | 10 | 1.7 | 1.96 | 0.715 | 0.328 | 7.6 | -0.0065 | 20.7 | 37.96 | 249 | -- | -- |
| 225.59 | 0.7 | 9.97 | 1.64 | 1.85 | 0.607 | -0.582 | -- | 0.00601 | 20.9 | 38.22 | 455 | -- | -- |
| 177.86 | 0.621 | 10 | 1.68 | 1.97 | 0.744 | -- | 7.06 | -0.0213 | 20.8 | 35.74 | 256 | -- | -- |
| 226.51 | 0.701 | 9.97 | 1.63 | 1.95 | 0.445 | -- | -- | 0.0221 | 20.8 | 36.73 | 430 | -- | -- |
| 370.48 | 0.896 | 9.93 | 1.85 | -- | 0.913 | -- | 7.41 | -0.0819 | -- | 35.03 | 573 | -- | -- |
| 229.25 | 0.71 | 9.97 | 1.65 | 2 | -- | -0.316 | -- | 0.0273 | 20.5 | -- | -- | -- | -- |
| 229.54 | 0.709 | 9.97 | 1.66 | 2 | -- | -- | -- | 0.0277 | 20.5 | -- | -- | -- | -- |
| 337.67 | 0.856 | 9.96 | 1.5 | -- | 1.8 | -- | -- | -0.188 | -- | -0.2439 | 870 | -- | -- |
| 227.34 | 0.702 | 9.97 | -- | 1.84 | -1.62 | -- | -- | -0.366 | 20.6 | 59.72 | 43117 | -- | -- |
| 452.68 | 0.994 | 9.91 | 1.65 | -- | -- | -- | -- | 0.008 | -- | -- | -- | -- | -- |
| 301.87 | 0.813 | 10 | -- | 1.99 | -- | -- | -- | -0.157 | 20.5 | -- | -- | -- | -- |
| 398.24 | 0.929 | 10 | -- | -- | 1.87 | -- | -- | -0.37 | -- | -3.325 | 884 | -- | -- |
| 524.23 | 1.07 | 9.96 | -- | -- | -- | -- | -- | -0.175 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 176.72 | radiation | 30 | 270 | > th | dose dependent | sin | 5 | NA |
| 4 | 176.89 | radiation | 40 | 270 | < th | dose independent | sin | 6 | NA |
| 6 | 177.02 | radiation | 30 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 13 | 177.44 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 22 | 178.07 | radiation | 30 | 270 | > th | dose dependent | rect. | 7 | 6 |
| 133 | 178.71 | radiation | 40 | 270 | > th | dose dependent | no | NA | NA |
| 270 | 178.77 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |
| 440 | 179.69 | humidity | 50 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 449 | 180.23 | radiation | 40 | 270 | < th | dose independent | rect. | 13 | 23 |
| 520 | 181.11 | radiation | 40 | 270 | < th | dose independent | no | NA | NA |
| 542 | 181.44 | temperature | 15 | 90 | > th | dose dependent | sin | 1 | NA |
| 565 | 181.69 | radiation | 40 | 270 | > th | dose independent | rect. | 13 | 23 |
| 572 | 181.97 | radiation | 40 | 270 | > th | dose independent | sin | 7 | NA |
| 796 | 183.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 801 | 183.56 | radiation | 40 | 270 | > th | dose independent | rect. | 8 | 4 |
| 818 | 183.56 | humidity | 50 | 90 | > th | dose dependent | rect. | 14 | 23 |
| 847 | 183.76 | humidity | 50 | 90 | > th | dose dependent | no | NA | NA |
| 918 | 184.44 | humidity | 90 | 90 | < th | dose dependent | rect. | 19 | 21 |
| 927 | 184.60 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 949 | 184.67 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 10 |
| 951 | 184.67 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 989 | 184.85 | radiation | 40 | 270 | > th | dose independent | no | NA | NA |