Os01g0894300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Fructokinase 1.
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Os01g0894300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Fructokinase 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.33 | 0.283 | 11.8 | 0.101 | 0.547 | -0.725 | -0.737 | 0.243 | 0.0485 | 7.53 | 1.307 | 282 | -- | -- |
| 36.41 | 0.281 | 11.8 | 0.0957 | 0.551 | -0.689 | -0.785 | -- | 0.049 | 7.22 | 3.67 | 286 | -- | -- |
| 37.83 | 0.286 | 11.8 | 0.0958 | 0.548 | -0.729 | -- | 0.237 | 0.0521 | 7.63 | 1.015 | 279 | -- | -- |
| 37.87 | 0.287 | 11.8 | 0.0853 | 0.541 | -0.756 | -- | -- | 0.0516 | 7.79 | 0.8523 | 279 | -- | -- |
| 44.79 | 0.312 | 11.8 | 0.147 | -- | -0.977 | -- | 0.945 | 0.103 | -- | -9.381 | 529 | -- | -- |
| 43.4 | 0.309 | 11.9 | 0.057 | 0.794 | -- | -0.741 | -- | -0.00674 | 5.42 | -- | -- | -- | -- |
| 44.76 | 0.313 | 11.9 | 0.0549 | 0.789 | -- | -- | -- | -0.00353 | 5.37 | -- | -- | -- | -- |
| 46.03 | 0.316 | 11.8 | 0.115 | -- | -0.955 | -- | -- | 0.0902 | -- | -3.378 | 498 | -- | -- |
| 38.06 | 0.287 | 11.8 | -- | 0.542 | -0.747 | -- | -- | 0.0402 | 7.74 | 0.9254 | 279 | -- | -- |
| 77.24 | 0.411 | 11.9 | 0.0817 | -- | -- | -- | -- | 0.016 | -- | -- | -- | -- | -- |
| 44.84 | 0.313 | 11.9 | -- | 0.79 | -- | -- | -- | -0.00965 | 5.37 | -- | -- | -- | -- |
| 46.37 | 0.317 | 11.9 | -- | -- | -0.951 | -- | -- | 0.0768 | -- | -6.604 | 486 | -- | -- |
| 77.41 | 0.411 | 11.9 | -- | -- | -- | -- | -- | 0.00694 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.84 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 3 | 31.19 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 16 |
| 14 | 32.06 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 8 |
| 15 | 32.09 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 18 |
| 21 | 32.36 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 10 | 19 |
| 28 | 32.44 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 4 | 17 |
| 47 | 32.71 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 68 | 32.94 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 18 |
| 72 | 33.00 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 9 |
| 79 | 33.07 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 20 |
| 83 | 33.09 | temperature | 25.0 | 30 | > th | dose independent | rect. | 10 | 8 |
| 100 | 33.21 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 106 | 33.24 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 21 |
| 107 | 33.25 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 10 | 9 |
| 130 | 33.40 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 157 | 33.52 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 17 |
| 165 | 33.58 | radiation | 10.0 | 270 | > th | dose independent | rect. | 9 | 7 |
| 167 | 33.58 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 182 | 33.66 | radiation | 40.0 | 270 | < th | dose independent | rect. | 4 | 18 |
| 205 | 33.75 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 20 |
| 207 | 33.77 | temperature | 25.0 | 270 | < th | dose independent | rect. | 4 | 15 |
| 225 | 33.85 | temperature | 25.0 | 90 | < th | dose independent | rect. | 5 | 17 |
| 233 | 33.88 | wind | 5.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 321 | 34.17 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 322 | 34.18 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 323 | 34.18 | radiation | 20.0 | 270 | < th | dose dependent | sin | 23 | NA |
| 331 | 34.21 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 343 | 34.22 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 23 | 6 |
| 367 | 34.27 | temperature | 10.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 368 | 34.27 | temperature | 30.0 | 90 | < th | dose independent | rect. | 23 | 6 |
| 369 | 34.27 | humidity | 50.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 372 | 34.27 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 376 | 34.27 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 381 | 34.29 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 23 | 6 |
| 385 | 34.29 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 23 | 6 |
| 391 | 34.30 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 403 | 34.34 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 509 | 34.58 | humidity | 90.0 | 270 | < th | dose independent | rect. | 9 | 7 |
| 525 | 34.62 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 9 | 8 |
| 531 | 34.64 | temperature | 15.0 | 270 | > th | dose independent | rect. | 8 | 9 |
| 587 | 34.72 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 599 | 34.76 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 10 |
| 610 | 34.79 | wind | 5.0 | 270 | < th | dose independent | rect. | 21 | 7 |
| 632 | 34.82 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 7 |
| 635 | 34.84 | wind | 7.0 | 270 | < th | dose independent | rect. | 23 | 15 |
| 644 | 34.85 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 18 |
| 649 | 34.85 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 660 | 34.87 | wind | 9.0 | 90 | < th | dose dependent | rect. | 23 | 6 |
| 677 | 34.90 | temperature | 30.0 | 10 | < th | dose dependent | sin | 22 | NA |
| 700 | 34.95 | radiation | 10.0 | 270 | > th | dose independent | sin | 22 | NA |
| 701 | 34.95 | temperature | 25.0 | 90 | < th | dose independent | rect. | 5 | 10 |
| 730 | 34.99 | wind | 9.0 | 270 | < th | dose dependent | rect. | 21 | 7 |
| 734 | 35.00 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 23 | 6 |
| 760 | 35.06 | wind | 1.0 | 30 | > th | dose independent | rect. | 5 | 18 |
| 761 | 35.08 | wind | 1.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 791 | 35.13 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 24 | 6 |
| 794 | 35.13 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 24 | 6 |
| 798 | 35.13 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 24 | 6 |
| 807 | 35.13 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 24 | 6 |
| 808 | 35.13 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 24 | 6 |
| 819 | 35.13 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 18 |
| 825 | 35.13 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 9 | 12 |
| 827 | 35.14 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 7 |
| 828 | 35.14 | temperature | 15.0 | 270 | > th | dose independent | rect. | 23 | 15 |
| 831 | 35.14 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 7 |
| 842 | 35.15 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 13 | 9 |
| 884 | 35.20 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 7 |
| 885 | 35.20 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 7 |
| 886 | 35.20 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 7 |
| 889 | 35.20 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 7 |
| 890 | 35.20 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 7 |
| 897 | 35.20 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 7 |
| 908 | 35.21 | wind | 9.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 922 | 35.24 | radiation | 10.0 | 270 | < th | dose independent | sin | 22 | NA |
| 930 | 35.25 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 23 | 6 |
| 935 | 35.26 | wind | 7.0 | 270 | < th | dose independent | rect. | 9 | 7 |
| 940 | 35.26 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 14 | 21 |
| 989 | 35.34 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 11 | 11 |