BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0224100 Os06g0224100|AK061083
(126 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0224100 Conserved hypothetical protein 215 8e-57
Os02g0750600 Ubiquitin domain containing protein 129 4e-31
Os03g0426800 Ubiquitin domain containing protein 100 4e-22
Os12g0141900 Conserved hypothetical protein 89 6e-19
Os04g0393300 Conserved hypothetical protein 86 8e-18
>Os06g0224100 Conserved hypothetical protein
Length = 126
Score = 215 bits (547), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 107/126 (84%), Positives = 107/126 (84%)
Query: 1 MASXXXXXXXMEAVEVRFRLDDGSDIGPSMHDQATTVTALKEFVLARWPQGKEIAPRTVN 60
MAS MEAVEVRFRLDDGSDIGPSMHDQATTVTALKEFVLARWPQGKEIAPRTVN
Sbjct: 1 MASGGGGGGGMEAVEVRFRLDDGSDIGPSMHDQATTVTALKEFVLARWPQGKEIAPRTVN 60
Query: 61 DVTIINAGQVLENNRTLAESRNLAAESPEGPITMHXXXXXXXXXXXXKQPPKARPPERIG 120
DVTIINAGQVLENNRTLAESRNLAAESPEGPITMH KQPPKARPPERIG
Sbjct: 61 DVTIINAGQVLENNRTLAESRNLAAESPEGPITMHVVVRRSRPERRVKQPPKARPPERIG 120
Query: 121 CGCTIL 126
CGCTIL
Sbjct: 121 CGCTIL 126
>Os02g0750600 Ubiquitin domain containing protein
Length = 119
Score = 129 bits (325), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 82/115 (71%), Gaps = 1/115 (0%)
Query: 12 EAVEVRFRLDDGSDIGPSMHDQATTVTALKEFVLARWPQGKEIAPRTVNDVTIINAGQVL 71
E +EV+FRL DG+DIGPS +D +TTV+ALKEF+LARWPQ KEI P+TVND+ +INAG++L
Sbjct: 6 EPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLINAGRIL 65
Query: 72 ENNRTLAESRNLAAESPEGPITMHXXXXXXXXXXXXKQPPKARPPERIGCGCTIL 126
ENNRTLAESR E P G ITMH ++ A P++ CGCTIL
Sbjct: 66 ENNRTLAESRVPVGEVPGGVITMHVVVRPPQPDKNSEK-QLANSPKQNRCGCTIL 119
>Os03g0426800 Ubiquitin domain containing protein
Length = 119
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 74/117 (63%), Gaps = 6/117 (5%)
Query: 12 EAVEVRFRLDDGSDIGPSMHDQATTVTALKEFVLARWPQGKEIAPRTVNDVTIINAGQVL 71
E E++FRL DG+DIGP + A+TV LKE ++A+WP+ KE PRTVND+ +INAG++L
Sbjct: 7 EQFEIKFRLPDGTDIGPKRYPAASTVATLKESIVAQWPKDKEKGPRTVNDLKLINAGKIL 66
Query: 72 ENNRTLAESRNLAAESPEGPITMHXXXXXXXXXXXXKQPPK--ARPPERIGCGCTIL 126
ENN+TL+E ++ + G TMH KQ K A+ P+ CGC+I+
Sbjct: 67 ENNKTLSECKSPICDF-SGLTTMH---VVVRAPTSDKQSNKIVAKKPKDFRCGCSIM 119
>Os12g0141900 Conserved hypothetical protein
Length = 101
Score = 89.4 bits (220), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 52/62 (83%), Gaps = 1/62 (1%)
Query: 34 ATTVTALKEFVLARWPQGKEIAPRTVNDVTIINAGQVLENNRTLAESRNLAAESPEGPIT 93
+TTV+ALKEF+LARWPQ KEI P+TVND+ +INAG++LENNRTL ESR + E P G IT
Sbjct: 16 STTVSALKEFILARWPQDKEITPKTVNDLKLINAGRILENNRTLVESR-VRVEVPGGVIT 74
Query: 94 MH 95
MH
Sbjct: 75 MH 76
>Os04g0393300 Conserved hypothetical protein
Length = 135
Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 66/113 (58%), Gaps = 6/113 (5%)
Query: 17 RFRLDDGSDIGP-SMHDQATTVTALKEFVLARWPQGKEIAPRTVNDVTIINAGQVLENNR 75
+FRL DGSDIGP + ATTV ALK+ V+A WP+ K I P+T NDV +I+ G++LEN++
Sbjct: 26 KFRLFDGSDIGPLRCNAVATTVAALKDRVVADWPKDKTIVPKTANDVKLISGGKILENDK 85
Query: 76 TLAESRNLAAESPEGPITMHXXXXXXXXXXXXKQPPKA--RPPERIGCGCTIL 126
+A+ R + P ITMH +P K + P+ C CTIL
Sbjct: 86 NIAQCRAPFGDLPSTAITMHVVVQPSSAKS---KPDKKTNKLPKTTRCSCTIL 135
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,741,424
Number of extensions: 114717
Number of successful extensions: 237
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 5
Length of query: 126
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 37
Effective length of database: 12,388,755
Effective search space: 458383935
Effective search space used: 458383935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)