Os03g0426800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ubiquitin domain containing protein.
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Os03g0426800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ubiquitin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.74 | 0.26 | 12.8 | -0.367 | 1.05 | -1.43 | 0.706 | 0.404 | -0.16 | 6.06 | 1.3 | 274 | 11.9 | 4.97 |
| 30.89 | 0.259 | 12.8 | -0.359 | 1.02 | -1.46 | 0.509 | -- | -0.157 | 6.08 | 1.4 | 272 | 11.9 | 5.05 |
| 31.56 | 0.262 | 12.8 | -0.345 | 1.09 | -1.36 | -- | 0.124 | -0.175 | 5.91 | 1.304 | 247 | 12.1 | 5.1 |
| 31.36 | 0.261 | 12.8 | -0.372 | 1.03 | -1.45 | -- | -- | -0.159 | 6.07 | 1.4 | 272 | 11.9 | 5.06 |
| 47.42 | 0.321 | 12.7 | -0.0429 | -- | -2.29 | -- | -0.156 | -0.0664 | -- | -10.29 | 358 | 11 | 6.17 |
| 64.39 | 0.376 | 12.8 | -0.388 | 2.01 | -- | 0.24 | -- | -0.245 | 5.67 | -- | -- | -- | -- |
| 64.53 | 0.376 | 12.8 | -0.387 | 2.01 | -- | -- | -- | -0.246 | 5.66 | -- | -- | -- | -- |
| 44.14 | 0.309 | 12.8 | -0.211 | -- | -2.31 | -- | -- | -0.138 | -- | 0.8 | 366 | 11.1 | 6.02 |
| 34.93 | 0.275 | 12.8 | -- | 1.05 | -1.42 | -- | -- | -0.125 | 6.03 | 1.296 | 267 | 11.9 | 5.12 |
| 273.74 | 0.773 | 12.8 | -0.323 | -- | -- | -- | -- | -0.198 | -- | -- | -- | -- | -- |
| 68.48 | 0.387 | 12.8 | -- | 2 | -- | -- | -- | -0.203 | 5.67 | -- | -- | -- | -- |
| 46.42 | 0.317 | 12.8 | -- | -- | -2.31 | -- | -- | -0.118 | -- | 0.7017 | 361 | 11 | 6.16 |
| 276.5 | 0.776 | 12.8 | -- | -- | -- | -- | -- | -0.162 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.00 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 2 | 31.71 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 5 |
| 3 | 31.88 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 3 |
| 4 | 31.88 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 5 |
| 5 | 31.88 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 5 |
| 6 | 31.92 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 8 | 31.92 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 12 | 5 |
| 9 | 31.92 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 19 |
| 11 | 31.99 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 19 |
| 12 | 32.41 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 19 |
| 13 | 32.41 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 19 |
| 14 | 32.41 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 19 |
| 15 | 32.50 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 19 |
| 17 | 32.61 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 3 |
| 18 | 32.70 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 3 |
| 19 | 32.70 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 3 |
| 21 | 32.74 | humidity | 90.0 | 270 | < th | dose independent | rect. | 12 | 5 |
| 22 | 32.77 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 3 |
| 24 | 32.77 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 3 |
| 26 | 32.77 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 21 |
| 27 | 32.89 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 32 | 33.47 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 3 |
| 34 | 33.57 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 21 |
| 35 | 33.57 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 21 |
| 41 | 33.75 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 21 |
| 43 | 33.89 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 5 |
| 44 | 33.93 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 3 |
| 47 | 34.16 | humidity | 90.0 | 270 | < th | dose independent | rect. | 13 | 3 |
| 50 | 34.20 | radiation | 1.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 57 | 34.35 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 21 |
| 86 | 34.82 | radiation | 1.0 | 270 | > th | dose independent | rect. | 13 | 3 |
| 114 | 35.33 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 18 |
| 129 | 35.60 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 5 |
| 133 | 35.65 | humidity | 50.0 | 270 | > th | dose independent | rect. | 13 | 3 |
| 135 | 35.84 | radiation | 20.0 | 270 | < th | dose independent | rect. | 22 | 9 |
| 136 | 35.84 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 17 | 19 |
| 137 | 35.86 | humidity | 70.0 | 270 | > th | dose independent | rect. | 22 | 9 |
| 142 | 35.92 | temperature | 10.0 | 270 | > th | dose independent | rect. | 22 | 9 |
| 143 | 35.92 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 9 |
| 144 | 35.92 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 9 |
| 146 | 35.92 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 9 |
| 148 | 35.92 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 15 |
| 150 | 35.95 | wind | 9.0 | 270 | < th | dose independent | rect. | 22 | 9 |
| 161 | 36.16 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 9 |
| 162 | 36.16 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 9 |
| 163 | 36.21 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 19 |
| 169 | 36.24 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 22 | 9 |
| 211 | 36.98 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 15 |
| 212 | 36.98 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 15 |
| 219 | 37.12 | wind | 1.0 | 90 | > th | dose dependent | rect. | 13 | 5 |
| 220 | 37.13 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 15 |
| 221 | 37.13 | temperature | 15.0 | 270 | > th | dose independent | rect. | 23 | 18 |
| 222 | 37.15 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 226 | 37.15 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 19 | 20 |
| 240 | 37.32 | humidity | 50.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 250 | 37.33 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 19 | 19 |
| 266 | 37.44 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 15 |
| 277 | 37.51 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 18 |
| 299 | 37.86 | wind | 1.0 | 270 | > th | dose dependent | rect. | 13 | 3 |
| 304 | 37.99 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 6 |
| 309 | 38.07 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 6 |
| 311 | 38.10 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 6 |
| 312 | 38.10 | radiation | 20.0 | 270 | < th | dose independent | rect. | 17 | 6 |
| 326 | 38.20 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 13 | 3 |
| 337 | 38.24 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 18 |
| 338 | 38.24 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 18 |
| 345 | 38.29 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 17 | 6 |
| 359 | 38.48 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 12 | 5 |
| 367 | 38.52 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 6 |
| 369 | 38.52 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 6 |
| 386 | 38.67 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 13 | 3 |
| 389 | 38.71 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 6 |
| 416 | 38.79 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 22 | 9 |
| 420 | 38.86 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 18 |
| 423 | 38.90 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 6 |
| 430 | 39.01 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 12 | 5 |
| 440 | 39.16 | radiation | 40.0 | 270 | < th | dose independent | rect. | 17 | 18 |
| 445 | 39.18 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 22 | 9 |
| 447 | 39.23 | temperature | 15.0 | 90 | > th | dose independent | rect. | 1 | 17 |
| 454 | 39.30 | radiation | 1.0 | 90 | > th | dose independent | sin | 15 | NA |
| 457 | 39.34 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 18 |
| 515 | 39.60 | radiation | 1.0 | 90 | < th | dose dependent | sin | 15 | NA |
| 526 | 39.71 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 17 | 6 |
| 527 | 39.73 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 14 | 4 |
| 528 | 39.73 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 14 | 4 |
| 529 | 39.73 | wind | 1.0 | 10 | > th | dose dependent | rect. | 14 | 5 |
| 551 | 39.82 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 15 |
| 555 | 39.84 | radiation | 1.0 | 90 | < th | dose independent | sin | 15 | NA |
| 559 | 39.85 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 15 |
| 573 | 39.92 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 7 |
| 574 | 39.92 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 7 |
| 575 | 39.92 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 7 |
| 576 | 39.92 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 17 |
| 577 | 39.92 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 17 |
| 594 | 39.97 | wind | 9.0 | 90 | < th | dose independent | rect. | 1 | 17 |
| 598 | 39.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 7 |
| 600 | 39.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 7 |
| 681 | 40.32 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 17 |
| 682 | 40.32 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 17 |
| 683 | 40.33 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 6 |
| 689 | 40.36 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 7 |
| 705 | 40.41 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 7 |
| 761 | 40.59 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 13 | 3 |
| 763 | 40.59 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 18 |
| 776 | 40.65 | wind | 9.0 | 270 | < th | dose dependent | rect. | 12 | 5 |
| 804 | 40.74 | wind | 9.0 | 270 | < th | dose dependent | rect. | 17 | 5 |
| 815 | 40.76 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 1 | 17 |
| 831 | 40.80 | radiation | 20.0 | 270 | < th | dose independent | rect. | 16 | 9 |
| 899 | 40.99 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 15 |
| 916 | 41.03 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 16 | 9 |
| 918 | 41.06 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 13 | 3 |
| 930 | 41.11 | wind | 1.0 | 270 | > th | dose independent | rect. | 5 | 7 |
| 932 | 41.11 | wind | 9.0 | 270 | < th | dose dependent | rect. | 13 | 3 |