BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0426800 Os03g0426800|AK099511
         (119 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0426800  Ubiquitin domain containing protein                 247   2e-66
Os02g0750600  Ubiquitin domain containing protein                 145   6e-36
Os04g0393300  Conserved hypothetical protein                      109   6e-25
Os06g0224100  Conserved hypothetical protein                      108   6e-25
Os12g0141900  Conserved hypothetical protein                       89   7e-19

>Os03g0426800 Ubiquitin domain containing protein
          Length = 119

 Score =  247 bits (630), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MSGGVQEQFEIKFRLPDGTDIGPKRYPAASTVATLKESIVAQWPKDKEKGPRTVNDLKLI 60
           MSGGVQEQFEIKFRLPDGTDIGPKRYPAASTVATLKESIVAQWPKDKEKGPRTVNDLKLI
Sbjct: 1   MSGGVQEQFEIKFRLPDGTDIGPKRYPAASTVATLKESIVAQWPKDKEKGPRTVNDLKLI 60

Query: 61  NAGKILENNKTLSECKSPICDFSGLTTMHVVVRAPTSDKQSNKIVAKKPKDFRCGCSIM 119
           NAGKILENNKTLSECKSPICDFSGLTTMHVVVRAPTSDKQSNKIVAKKPKDFRCGCSIM
Sbjct: 61  NAGKILENNKTLSECKSPICDFSGLTTMHVVVRAPTSDKQSNKIVAKKPKDFRCGCSIM 119



>Os02g0750600 Ubiquitin domain containing protein
          Length = 119

 Score =  145 bits (366), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 71/120 (59%), Positives = 92/120 (76%), Gaps = 2/120 (1%)

Query: 1   MSGGVQEQFEIKFRLPDGTDIGPKRYPAASTVATLKESIVAQWPKDKEKGPRTVNDLKLI 60
           M+GG +E  E+KFRL DGTDIGP +Y  ++TV+ LKE I+A+WP+DKE  P+TVNDLKLI
Sbjct: 1   MAGG-KEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLI 59

Query: 61  NAGKILENNKTLSECKSPICDF-SGLTTMHVVVRAPTSDKQSNKIVAKKPKDFRCGCSIM 119
           NAG+ILENN+TL+E + P+ +   G+ TMHVVVR P  DK S K +A  PK  RCGC+I+
Sbjct: 60  NAGRILENNRTLAESRVPVGEVPGGVITMHVVVRPPQPDKNSEKQLANSPKQNRCGCTIL 119



>Os04g0393300 Conserved hypothetical protein
          Length = 135

 Score =  109 bits (272), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 57/110 (51%), Positives = 77/110 (70%), Gaps = 2/110 (1%)

Query: 12  KFRLPDGTDIGPKRYPA-ASTVATLKESIVAQWPKDKEKGPRTVNDLKLINAGKILENNK 70
           KFRL DG+DIGP R  A A+TVA LK+ +VA WPKDK   P+T ND+KLI+ GKILEN+K
Sbjct: 26  KFRLFDGSDIGPLRCNAVATTVAALKDRVVADWPKDKTIVPKTANDVKLISGGKILENDK 85

Query: 71  TLSECKSPICDF-SGLTTMHVVVRAPTSDKQSNKIVAKKPKDFRCGCSIM 119
            +++C++P  D  S   TMHVVV+  ++  + +K   K PK  RC C+I+
Sbjct: 86  NIAQCRAPFGDLPSTAITMHVVVQPSSAKSKPDKKTNKLPKTTRCSCTIL 135



>Os06g0224100 Conserved hypothetical protein
          Length = 126

 Score =  108 bits (271), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 79/115 (68%), Gaps = 2/115 (1%)

Query: 7   EQFEIKFRLPDGTDIGPKRYPAASTVATLKESIVAQWPKDKEKGPRTVNDLKLINAGKIL 66
           E  E++FRL DG+DIGP  +  A+TV  LKE ++A+WP+ KE  PRTVND+ +INAG++L
Sbjct: 12  EAVEVRFRLDDGSDIGPSMHDQATTVTALKEFVLARWPQGKEIAPRTVNDVTIINAGQVL 71

Query: 67  ENNKTLSECKSPICDF-SGLTTMHVVVRAPTSDKQSNKIV-AKKPKDFRCGCSIM 119
           ENN+TL+E ++   +   G  TMHVVVR    +++  +   A+ P+   CGC+I+
Sbjct: 72  ENNRTLAESRNLAAESPEGPITMHVVVRRSRPERRVKQPPKARPPERIGCGCTIL 126



>Os12g0141900 Conserved hypothetical protein
          Length = 101

 Score = 89.0 bits (219), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 43/75 (57%), Positives = 56/75 (74%)

Query: 29  ASTVATLKESIVAQWPKDKEKGPRTVNDLKLINAGKILENNKTLSECKSPICDFSGLTTM 88
           ++TV+ LKE I+A+WP+DKE  P+TVNDLKLINAG+ILENN+TL E +  +    G+ TM
Sbjct: 16  STTVSALKEFILARWPQDKEITPKTVNDLKLINAGRILENNRTLVESRVRVEVPGGVITM 75

Query: 89  HVVVRAPTSDKQSNK 103
           HVVV  P SDK   +
Sbjct: 76  HVVVHPPQSDKNKRR 90



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,100,948
Number of extensions: 145968
Number of successful extensions: 343
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 339
Number of HSP's successfully gapped: 5
Length of query: 119
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 34
Effective length of database: 12,597,611
Effective search space: 428318774
Effective search space used: 428318774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)