Os04g0393300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0393300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10.63 | 0.153 | 12.3 | -0.528 | 0.0791 | 0.271 | -0.307 | -1.06 | -0.0504 | 8.91 | 18.35 | 3833 | -- | -- |
| 11.51 | 0.158 | 12.3 | -0.314 | 0.0912 | 0.299 | -0.303 | -- | -0.00863 | 8.25 | 14.99 | 10901 | -- | -- |
| 10.88 | 0.154 | 12.3 | -0.536 | 0.0687 | 0.26 | -- | -1.01 | -0.0498 | 8.15 | 17.86 | 4410 | -- | -- |
| 11.62 | 0.159 | 12.3 | -0.344 | 0.0743 | 0.333 | -- | -- | -0.0238 | 7.84 | 10.41 | 10853 | -- | -- |
| 11.14 | 0.155 | 12.3 | -0.533 | -- | 0.259 | -- | -1.02 | -0.0481 | -- | 17.9 | 4403 | -- | -- |
| 13.16 | 0.17 | 12.2 | -0.131 | 0.068 | -- | -0.285 | -- | 0.0824 | 8.18 | -- | -- | -- | -- |
| 13.41 | 0.171 | 12.2 | -0.14 | 0.0698 | -- | -- | -- | 0.0823 | 7.67 | -- | -- | -- | -- |
| 11.88 | 0.161 | 12.3 | -0.353 | -- | 0.333 | -- | -- | -0.0296 | -- | 10.26 | 11575 | -- | -- |
| 12.99 | 0.169 | 12.2 | -- | 0.115 | 0.298 | -- | -- | 0.0627 | 4.73 | 10.41 | 10853 | -- | -- |
| 13.67 | 0.173 | 12.2 | -0.139 | -- | -- | -- | -- | 0.0834 | -- | -- | -- | -- | -- |
| 13.92 | 0.175 | 12.2 | -- | 0.0687 | -- | -- | -- | 0.0979 | 7.81 | -- | -- | -- | -- |
| 13.54 | 0.172 | 12.2 | -- | -- | 0.173 | -- | -- | 0.0757 | -- | 18 | 4374 | -- | -- |
| 14.18 | 0.176 | 12.2 | -- | -- | -- | -- | -- | 0.0988 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 9.90 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 12 | 10.19 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 21 |
| 22 | 10.26 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 23 | 10.28 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 18 |
| 35 | 10.38 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 45 | 10.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 16 | 17 |
| 52 | 10.44 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 53 | 10.44 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 54 | 10.44 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 57 | 10.46 | humidity | 80 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 75 | 10.48 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 81 | 10.49 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 87 | 10.50 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 115 | 10.53 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 170 | 10.58 | humidity | 80 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 184 | 10.59 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 216 | 10.61 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 242 | 10.62 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 243 | 10.62 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 244 | 10.62 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 245 | 10.62 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 269 | 10.63 | atmosphere | 1010 | 43200 | > th | dose independent | sin | 10 | NA |
| 275 | 10.63 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 276 | 10.63 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 278 | 10.63 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 279 | 10.63 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 280 | 10.63 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 405 | 10.63 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 14 |
| 433 | 10.63 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 451 | 10.64 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 452 | 10.64 | atmosphere | 1010 | 43200 | > th | dose independent | sin | 7 | NA |
| 458 | 10.64 | atmosphere | 1010 | 43200 | < th | dose independent | sin | 10 | NA |
| 467 | 10.64 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 474 | 10.64 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 544 | 10.64 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 11 |
| 588 | 10.64 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 15 |
| 665 | 10.64 | temperature | 25 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 684 | 10.64 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 10 |
| 699 | 10.65 | atmosphere | 1010 | 43200 | > th | dose independent | sin | 4 | NA |
| 702 | 10.65 | atmosphere | 1010 | 43200 | > th | dose independent | no | NA | NA |
| 703 | 10.65 | atmosphere | 1010 | 43200 | < th | dose independent | sin | 7 | NA |
| 708 | 10.65 | atmosphere | 1010 | 43200 | < th | dose independent | no | NA | NA |
| 709 | 10.65 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 744 | 10.65 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 775 | 10.65 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 13 |
| 787 | 10.65 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 10 | 14 |
| 792 | 10.65 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 10 | 14 |
| 802 | 10.65 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 8 | 15 |
| 883 | 10.65 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 1 | 19 |