BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0210100 Os06g0210100|AK120435
(232 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0210100 emp24/gp25L/p24 family protein 389 e-108
Os02g0768200 emp24/gp25L/p24 family protein 354 3e-98
Os09g0453200 emp24/gp25L/p24 family protein 243 8e-65
Os07g0632700 emp24/gp25L/p24 family protein 193 1e-49
Os03g0376000 emp24/gp25L/p24 family protein 183 7e-47
Os08g0469400 180 6e-46
AK108340 80 9e-16
Os03g0744800 emp24/gp25L/p24 family protein 72 4e-13
>Os06g0210100 emp24/gp25L/p24 family protein
Length = 232
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 47 WLDLPPTGTKCVSEEIQPNVVVLADYALMYESHPTAHPTVAVKVTSPYGNTVHHNENATT 106
WLDLPPTGTKCVSEEIQPNVVVLADYALMYESHPTAHPTVAVKVTSPYGNTVHHNENATT
Sbjct: 47 WLDLPPTGTKCVSEEIQPNVVVLADYALMYESHPTAHPTVAVKVTSPYGNTVHHNENATT 106
Query: 107 GQFAFTTSEAGNYLACFWLDSPEKGSGVSLNLDWKIGIAAKDWDTVAKKEKIEGVELELR 166
GQFAFTTSEAGNYLACFWLDSPEKGSGVSLNLDWKIGIAAKDWDTVAKKEKIEGVELELR
Sbjct: 107 GQFAFTTSEAGNYLACFWLDSPEKGSGVSLNLDWKIGIAAKDWDTVAKKEKIEGVELELR 166
Query: 167 KLEAAVESIHHNLLYLKAREAEMRTVSEKTNSRVAWFSILSLGVCIVVSVLQLWHLQGFF 226
KLEAAVESIHHNLLYLKAREAEMRTVSEKTNSRVAWFSILSLGVCIVVSVLQLWHLQGFF
Sbjct: 167 KLEAAVESIHHNLLYLKAREAEMRTVSEKTNSRVAWFSILSLGVCIVVSVLQLWHLQGFF 226
Query: 227 RKKKLI 232
RKKKLI
Sbjct: 227 RKKKLI 232
>Os02g0768200 emp24/gp25L/p24 family protein
Length = 218
Score = 354 bits (908), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 162/186 (87%), Positives = 178/186 (95%)
Query: 47 WLDLPPTGTKCVSEEIQPNVVVLADYALMYESHPTAHPTVAVKVTSPYGNTVHHNENATT 106
WLDLP +GTKCVSEEIQ NVVVLADYALMYESHP++HPT+AVKVTSPYGNT+HHNENAT
Sbjct: 33 WLDLPQSGTKCVSEEIQSNVVVLADYALMYESHPSSHPTIAVKVTSPYGNTLHHNENATV 92
Query: 107 GQFAFTTSEAGNYLACFWLDSPEKGSGVSLNLDWKIGIAAKDWDTVAKKEKIEGVELELR 166
GQFAFTTSEAGNYLACFW+DS EKGSG+S+NLDWKIGIAAKDWD +AKKEKIEGVELELR
Sbjct: 93 GQFAFTTSEAGNYLACFWIDSAEKGSGISINLDWKIGIAAKDWDVIAKKEKIEGVELELR 152
Query: 167 KLEAAVESIHHNLLYLKAREAEMRTVSEKTNSRVAWFSILSLGVCIVVSVLQLWHLQGFF 226
KLE AV+SIH N++YLKAREAEMRTVSEKTN+RVAWFSILSL VCIVVS+LQLWHLQG+F
Sbjct: 153 KLEVAVQSIHQNMIYLKAREAEMRTVSEKTNARVAWFSILSLSVCIVVSILQLWHLQGYF 212
Query: 227 RKKKLI 232
+KKKLI
Sbjct: 213 QKKKLI 218
>Os09g0453200 emp24/gp25L/p24 family protein
Length = 262
Score = 243 bits (620), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 124/236 (52%), Positives = 152/236 (64%), Gaps = 52/236 (22%)
Query: 47 WLDLPPTGTKCVSEEIQPNVVVLADYALMYESHPTAHPTVAVK----------------- 89
WL++PP+ TKCVSEEIQ NVVV+ DY+++YE H +PTV VK
Sbjct: 29 WLEIPPSATKCVSEEIQSNVVVIGDYSVLYEHH--LNPTVTVKTVEAATKFLSFCDPEMA 86
Query: 90 ---------------------------------VTSPYGNTVHHNENATTGQFAFTTSEA 116
VTSP+G+ VHH + +TGQF+FTT+EA
Sbjct: 87 SPCQGLLEEVRCNHIHLERRAIPISSRFGTPAKVTSPFGDIVHHKQKVSTGQFSFTTAEA 146
Query: 117 GNYLACFWLDSPEKGSGVSLNLDWKIGIAAKDWDTVAKKEKIEGVELELRKLEAAVESIH 176
GNYLACF D K V LNLDW++GIA KDWD+VAKKEK+EGVELEL KLE +V++IH
Sbjct: 147 GNYLACFSADGRNKRLVVKLNLDWRVGIATKDWDSVAKKEKLEGVELELVKLETSVQAIH 206
Query: 177 HNLLYLKAREAEMRTVSEKTNSRVAWFSILSLGVCIVVSVLQLWHLQGFFRKKKLI 232
NLL L+++EA MR SEKTN+R W SI+SL VCI+VSVLQLWHLQ +FRKKKLI
Sbjct: 207 ENLLLLRSKEANMRDTSEKTNARATWLSIISLIVCIIVSVLQLWHLQQYFRKKKLI 262
>Os07g0632700 emp24/gp25L/p24 family protein
Length = 230
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 88/192 (45%), Positives = 131/192 (68%), Gaps = 8/192 (4%)
Query: 48 LDLPPTGTKCVSEEIQPNVVVLADYALMYESH-------PTAHPTVAVKVTSPYGNTVHH 100
DL TKC+S+EI+ N +V+ Y ++ P +H ++++VTSPYGN+VH+
Sbjct: 40 FDLESGHTKCISDEIKVNSMVVGKYHVVGPDPNFPDNPLPDSH-RISLRVTSPYGNSVHY 98
Query: 101 NENATTGQFAFTTSEAGNYLACFWLDSPEKGSGVSLNLDWKIGIAAKDWDTVAKKEKIEG 160
EN +G FAFT +EAG+YLACFW + + DW+ G+AAKDW VAKK +++
Sbjct: 99 AENVPSGNFAFTATEAGDYLACFWAPDHKPPVSIGFEFDWRSGVAAKDWSNVAKKGQVDV 158
Query: 161 VELELRKLEAAVESIHHNLLYLKAREAEMRTVSEKTNSRVAWFSILSLGVCIVVSVLQLW 220
+E+EL+KLE ++SIH + YL+ RE EM+ ++++TNSR+AW LSLG+C+ V+ LQLW
Sbjct: 159 MEMELKKLEETIKSIHEEMFYLREREEEMQNLNKQTNSRMAWLGFLSLGICLSVAGLQLW 218
Query: 221 HLQGFFRKKKLI 232
HL+ FF +KKL+
Sbjct: 219 HLKTFFERKKLL 230
>Os03g0376000 emp24/gp25L/p24 family protein
Length = 232
Score = 183 bits (465), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 86/207 (41%), Positives = 127/207 (61%), Gaps = 27/207 (13%)
Query: 48 LDLPPTGTKCVSEEIQPNVVVLADY----------------------ALMYESHPTAHPT 85
DL TKC+S++I+ + + Y L+ ESH
Sbjct: 31 FDLQSGHTKCISDDIKVGAMAVGKYHVVVPEGGGSTSSSSSSSSSAQPLLPESH-----R 85
Query: 86 VAVKVTSPYGNTVHHNENATTGQFAFTTSEAGNYLACFWLDSPEKGSGVSLNLDWKIGIA 145
V+++VTSPYGN++H++EN +G FAFT SEAG+YLACFW + V DW+ G++
Sbjct: 86 VSLRVTSPYGNSLHYSENVQSGNFAFTASEAGDYLACFWAPDHRPTATVGFEFDWRSGVS 145
Query: 146 AKDWDTVAKKEKIEGVELELRKLEAAVESIHHNLLYLKAREAEMRTVSEKTNSRVAWFSI 205
A+DW VAKK +++ +E+EL+KLE + SIH + YL+ARE EM+ ++ +TNSR+AW
Sbjct: 146 ARDWTNVAKKGQVDMMEVELKKLEDTINSIHEEMFYLRAREEEMQELNRRTNSRMAWLGF 205
Query: 206 LSLGVCIVVSVLQLWHLQGFFRKKKLI 232
SL +C+ V+ LQLWHL+ FF +KKL+
Sbjct: 206 FSLAICLSVAGLQLWHLKNFFERKKLL 232
>Os08g0469400
Length = 180
Score = 180 bits (457), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 121/186 (65%), Gaps = 28/186 (15%)
Query: 47 WLDLPPTGTKCVSEEIQPNVVVLADYALMYESHPTAHPTVAVKVTSPYGNTVHHNENATT 106
W++L T TKC SE IQ NVVV+ DY ++++ +PT P ++++VTSPYG +HH E
Sbjct: 23 WMELSTTATKCFSERIQSNVVVIGDYDILFDGYPT-RPILSIQVTSPYGKVLHHREKVMQ 81
Query: 107 GQFAFTTSEAGNYLACFWLDSPEKGSGVSLNLDWKIGIAAKDWDTVAKKEKIEGVELELR 166
GQF+F T+E G YLACF +D+ +K GV+L EL
Sbjct: 82 GQFSFNTAEPGVYLACFSVDTLDKELGVAL---------------------------ELT 114
Query: 167 KLEAAVESIHHNLLYLKAREAEMRTVSEKTNSRVAWFSILSLGVCIVVSVLQLWHLQGFF 226
KLE AV+++H NL+YL+++E++MR VS+ TN ++ W S++SL VC++ S+ QLWHL+ FF
Sbjct: 115 KLETAVQAVHGNLMYLRSKESDMRDVSDWTNFKITWLSLMSLSVCVIASIAQLWHLKRFF 174
Query: 227 RKKKLI 232
RKKKLI
Sbjct: 175 RKKKLI 180
>AK108340
Length = 242
Score = 80.5 bits (197), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 22/203 (10%)
Query: 47 WLDLPPTGTKCVSEEIQPNVVVLADY--------ALMYESHPTAHPTVAVKVTSPYGNTV 98
++D P KC EE+ + +V+ + A Y +P + V + V
Sbjct: 43 YIDGP--SQKCFFEELPKDTLVVGHFTATQWNEQAKAYMPNPDMGVFITVDEVFDNDHRV 100
Query: 99 HHNENATTGQFAFTTSEAGNYLACF----------WLDSPEKGSGVSLNLDWKIGIAAKD 148
+ +G+F FT ++AG++ CF +L G+ LD IG +K
Sbjct: 101 VSQRSKGSGKFIFTAADAGDHRLCFTPTNVPATSGFLFHGGSAGGIKFELDMAIGDTSKI 160
Query: 149 WDTVAKKEKIEGVELELRKLEAAVESIHHNLLYLKAREAEMRTVSEKTNSRVAWFSILSL 208
+ K+KIE V ++R L A ++ + ++ + REAE R +SE N+RV +++L L
Sbjct: 161 --ESSDKDKIEDVVKKVRDLNARLQDVKREQVFQREREAEFRDISESVNARVVRWTLLQL 218
Query: 209 GVCIVVSVLQLWHLQGFFRKKKL 231
V + QL +L+ FF K+KL
Sbjct: 219 AVLGITCTWQLSYLRAFFIKQKL 241
>Os03g0744800 emp24/gp25L/p24 family protein
Length = 210
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 96/188 (51%), Gaps = 15/188 (7%)
Query: 48 LDLPPTGTKCVSE-------EIQPNVVVLADYALMYESHPTAHPTVAVKVTSPYGNTVHH 100
L + T T+C+ E + N VV+ D+ + + S HP + + VTSP GNTV+
Sbjct: 24 LSVTVTDTECIHEFVPYEGDTVSGNFVVV-DHDIFWSS---DHPGIDLTVTSPGGNTVYT 79
Query: 101 NENATTGQFAFTTSEAGNYLACFWLDSPEKGSGVSLNLDWKIGIAAKDWDTVAKKEKIEG 160
+ + +F F G Y CF +P G+ +++ +G + + +AK E ++
Sbjct: 80 LKGKSGDKFEFKAPRGGMYKFCF--HNP-YGAPETVSFYIHVGHIPNEHN-LAKDEHLDP 135
Query: 161 VELELRKLEAAVESIHHNLLYLKAREAEMRTVSEKTNSRVAWFSILSLGVCIVVSVLQLW 220
+ +++ +L+ A+ES+ YLKAREA R +E T RV +++I + S LQ+
Sbjct: 136 INVKIAELKEALESVTAEQKYLKAREARHRHTNESTRRRVMFYTIAEYLAFMGASALQVV 195
Query: 221 HLQGFFRK 228
+++ F K
Sbjct: 196 YIRRLFSK 203
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,385,462
Number of extensions: 237986
Number of successful extensions: 701
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 696
Number of HSP's successfully gapped: 8
Length of query: 232
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 134
Effective length of database: 11,918,829
Effective search space: 1597123086
Effective search space used: 1597123086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)