BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0163400 Os06g0163400|AK073970
(533 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0163400 Thioredoxin domain 2 containing protein 919 0.0
Os02g0100100 Protein disulphide isomerase family protein 243 3e-64
Os04g0436300 Similar to Protein disulfide-isomerase precurs... 134 2e-31
Os11g0199200 Similar to Protein disulfide isomerase (Fragment) 120 2e-27
Os02g0554900 Similar to Protein disulfide isomerase (Fragment) 112 6e-25
Os02g0550300 Similar to Protein disulfide isomerase 72 2e-12
>Os06g0163400 Thioredoxin domain 2 containing protein
Length = 533
Score = 919 bits (2375), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/467 (96%), Positives = 452/467 (96%)
Query: 67 QSMVLVLDNDNARRAVEENAEVLLLGYAPWCERSAQLMPRFXXXXXXXXXXXXXXXFAKL 126
QSMVLVLDNDNARRAVEENAEVLLLGYAPWCERSAQLMPRF FAKL
Sbjct: 67 QSMVLVLDNDNARRAVEENAEVLLLGYAPWCERSAQLMPRFAEAAAALRAMGSAVAFAKL 126
Query: 127 DGERYPKAASAVGVKGFPTVLLFVNGTEHQFTGLHTKDAIVTWVRKKTGAPASRIQSKDS 186
DGERYPKAASAVGVKGFPTVLLFVNGTEHQFTGLHTKDAIVTWVRKKTGAPASRIQSKDS
Sbjct: 127 DGERYPKAASAVGVKGFPTVLLFVNGTEHQFTGLHTKDAIVTWVRKKTGAPASRIQSKDS 186
Query: 187 AEEFLKKDQTFAVGLFKNFEGAEYEEFVKAATSENEVQFVETNDRNVAKILFPGIASEEQ 246
AEEFLKKDQTFAVGLFKNFEGAEYEEFVKAATSENEVQFVETNDRNVAKILFPGIASEEQ
Sbjct: 187 AEEFLKKDQTFAVGLFKNFEGAEYEEFVKAATSENEVQFVETNDRNVAKILFPGIASEEQ 246
Query: 247 FLGLVKSEPEKFEKFNGAFEEKEIIQFVELNKFPLITVFTDLNSGKVYGSPIKLQVFTFA 306
FLGLVKSEPEKFEKFNGAFEEKEIIQFVELNKFPLITVFTDLNSGKVYGSPIKLQVFTFA
Sbjct: 247 FLGLVKSEPEKFEKFNGAFEEKEIIQFVELNKFPLITVFTDLNSGKVYGSPIKLQVFTFA 306
Query: 307 EAYDFEDLESMIQEVARGFKTKIMLIYVDTAEEKLAKPFLTLYGLEPEKPTVTAFDTSKG 366
EAYDFEDLESMIQEVARGFKTKIMLIYVDTAEEKLAKPFLTLYGLEPEKPTVTAFDTSKG
Sbjct: 307 EAYDFEDLESMIQEVARGFKTKIMLIYVDTAEEKLAKPFLTLYGLEPEKPTVTAFDTSKG 366
Query: 367 TKYLMEAEINAKNLQDFCLSLLEGTLPPYFRSEPVPEEKGPIEKVVGRTFDSSVLESPQN 426
TKYLMEAEINAKNLQDFCLSLLEGTLPPYFRSEPVPEEKGPIEKVVGRTFDSSVLESPQN
Sbjct: 367 TKYLMEAEINAKNLQDFCLSLLEGTLPPYFRSEPVPEEKGPIEKVVGRTFDSSVLESPQN 426
Query: 427 VFLEVHAPWCVDCEAISKNVEKLAKHFNDLGQTNLKFARIDASVNEHPKLQINNYPTLLL 486
VFLEVHAPWCVDCEAISKNVEKLAKHFNDLGQTNLKFARIDASVNEHPKLQINNYPTLLL
Sbjct: 427 VFLEVHAPWCVDCEAISKNVEKLAKHFNDLGQTNLKFARIDASVNEHPKLQINNYPTLLL 486
Query: 487 YPAQDKSNPIKLSKKSNLKDMAKFVKEKLQIADVETVAAGDIVKDEL 533
YPAQDKSNPIKLSKKSNLKDMAKFVKEKLQIADVETVAAGDIVKDEL
Sbjct: 487 YPAQDKSNPIKLSKKSNLKDMAKFVKEKLQIADVETVAAGDIVKDEL 533
>Os02g0100100 Protein disulphide isomerase family protein
Length = 563
Score = 243 bits (619), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/455 (30%), Positives = 235/455 (51%), Gaps = 6/455 (1%)
Query: 67 QSMVLVLDNDNARRAVEENAEVLLLGYAPWCERSAQLMPRFXXXXXXXXXXXXXXXFAKL 126
++ V +L N + + V++ YAPWC L P + AK+
Sbjct: 72 ETHVFLLSAANFSDFLASHRHVMVEFYAPWCAHCQALAPDYAAAAADLSPLAHQVALAKV 131
Query: 127 DGERYPKAASAVGVKGFPTVLLFVNGTEHQFTGLHTKDAIVTWVRKKTGAPASRIQSKDS 186
D A V+GFPT+L F++G + G TK+AIV+WV KK I + D
Sbjct: 132 DATEDTDLAQKYDVQGFPTILFFIDGVPKDYNGARTKEAIVSWVNKKLAPGVQNITTVDE 191
Query: 187 AEEFLKKDQTFAVGLFKNFEGAEYEEFVKAATSENEVQFVETNDRNVAKILFPGIASEEQ 246
AE+ L + + + + GA +E A+ E+ + F +T++ +VAK+ A++
Sbjct: 192 AEKILTGEDKAILAVLDSLSGAHSDEIAAASRLEDAINFYQTSNPDVAKLFHLDPAAKRP 251
Query: 247 FLGLV-KSEPEKFEKFNGAFEEKEIIQFVELNKFPLITVFTDLNSGKVYGSPIKLQVFTF 305
L L+ K E EK ++G F+ I FV NK PL+ T + ++ +PIK Q+ F
Sbjct: 252 SLVLLKKQEEEKLTFYDGPFKASAIADFVSANKLPLVNTLTQETAPSIFDNPIKKQILLF 311
Query: 306 AEAYDFEDLESMIQEVARGFKTKIMLIYVDTAEEKLAKPFLTLYGLEPEKPTVTAFDTSK 365
A + + +E ++ FK K++ ++V+ E++ +P +G+ ++ TV A+ ++
Sbjct: 312 VVANESSKFLPIFKEASKSFKGKLLFVFVERDNEEVGEPVANYFGITGQETTVLAYTGNE 371
Query: 366 GTK-YLMEAEINAKNLQDFCLSLLEGTLPPYFRSEPVPEE-KGPIEKVVGRTFDSSVLES 423
+ + ++ EI+ +N++ F LE L P+++SEPVPE +G ++ VVG+ D VL+
Sbjct: 372 DARNFFLDGEISVENIKRFAEDFLEEKLTPFYKSEPVPESNEGDVKIVVGKNLDQIVLDE 431
Query: 424 PQNVFLEVHAPWCVDCEAISKNVEKLAKHFNDLGQTNLKFARIDASVNEHPKLQINNYPT 483
++ LE++APWC C+ + KL KH G +L A++D + NEHP+ + + +PT
Sbjct: 432 SKDALLEIYAPWCGHCQELEPTYNKLGKHLR--GIDSLVIAKMDGTANEHPRAKPDGFPT 489
Query: 484 LLLYPAQDKS-NPIKLSKKSNLKDMAKFVKEKLQI 517
+L YPA KS PI + +M KF+K+ I
Sbjct: 490 ILFYPAGKKSFEPITFEGDRTVVEMYKFIKKHASI 524
>Os04g0436300 Similar to Protein disulfide-isomerase precursor (EC 5.3.4.1) (PDI)
Length = 517
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 135/498 (27%), Positives = 213/498 (42%), Gaps = 48/498 (9%)
Query: 70 VLVLDNDNARRAVEENAEVLLLGYAPWCERSAQLMPRFXXXXXXXXXXXXXXXFAKLDG- 128
VL LD N V ++ +++ YAPWC QL P + AK+D
Sbjct: 34 VLTLDAGNFSEVVAKHPFIVVKFYAPWCGHCKQLAPEYEKAASILRKNELPVVLAKVDAY 93
Query: 129 -ERYPKAASAVGVKGFPTVLLFVNGTE--HQFTGLHTKDAIVTWVRKKTGAPASRIQSKD 185
ER + GV +PT+ + NG + G D IV +++++ G + +++S +
Sbjct: 94 NERNKELKDKYGVYSYPTIKIMKNGGSDVRGYGGPREADGIVEYLKRQVGPASLKLESAE 153
Query: 186 SAEEFLKKDQTFAVGLFKNFEGAEYEEF-VKAATSENEVQFVETNDRNVAKILFPGIAS- 243
A + VG+F F G EYE F V A + F T+D A IL G S
Sbjct: 154 EAAHSVVDKGVILVGVFPEFAGMEYENFMVVAEKMRADYDFFHTSD---ASILPRGDQSV 210
Query: 244 EEQFLGLVKSEPEKFEKFNGAFEEKEIIQFVELNKFPLITVF-TDLNSGK----VYGSPI 298
+ + L K E F + F + + +F+E++ FP++ + D + K Y +P
Sbjct: 211 KGPIVRLFKPFDELFVD-SEDFGKDALEKFIEVSGFPMVVTYDADPTNHKFLERYYSTPS 269
Query: 299 -KLQVFTFAEAYDFEDLESMIQEVARGFK-TKIMLIYVDTAEEKLAKPFLTLYGLEPEKP 356
K +F E +S I E AR F I + D A+ A +GL E
Sbjct: 270 SKAMLFVSFGDDRIESFKSQIHEAARKFSGNNISFLIGDVAD---ADRVFQYFGLR-ESD 325
Query: 357 TVTAFDTSKGTKYL---MEAEINAKNLQDFCLSLLEGTLPPYFRSEPVPE-EKGPIEKVV 412
F + KYL M+ + L+ + + G L PY +SEP+P+ P++ VV
Sbjct: 326 VPLLFVIASTGKYLNPTMDPDQIIPWLKQYIVEY--GNLTPYVKSEPIPKVNDQPVKVVV 383
Query: 413 GRTFDSSVLESPQNVFLEVHAPWCVDCEAISKNVEKLAKHFNDLGQTNLKFARIDASVNE 472
D V S +NV LE +APWC C + +E++A D ++ A++D +VN+
Sbjct: 384 ADNIDDIVFNSGKNVLLEFYAPWCGHCRKFALILEEIAVSLQD--DQDIVIAKMDGTVND 441
Query: 473 HP-KLQINNYPTLLLYPAQDKSNPIKLSKKSNLKDMAKF--------------VKEKLQI 517
P + YPT+ Y + N + +++ F V EK QI
Sbjct: 442 IPTDFTVEGYPTIYFYSSS--GNLLSYDGARTAEEIISFINENRGPKAGAAAAVDEKTQI 499
Query: 518 ADV--ETVAAGDIVKDEL 533
V E ++ + VKDEL
Sbjct: 500 DAVEEEVTSSSEPVKDEL 517
>Os11g0199200 Similar to Protein disulfide isomerase (Fragment)
Length = 512
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 111/481 (23%), Positives = 211/481 (43%), Gaps = 27/481 (5%)
Query: 70 VLVLDNDNARRAVEENAEVLLLGYAPWCERSAQLMPRFXXXXXXXXXXXXXXXFAKLDG- 128
VL LD D AV ++ +++ YAPWC +L P + AK+D
Sbjct: 42 VLTLDADGFDEAVAKHPFMVVEFYAPWCGHCKKLAPEYEKAAQELSKHDPPIVLAKVDAN 101
Query: 129 -ERYPKAASAVGVKGFPTVLLFVNGTEH--QFTGLHTKDAIVTWVRKKTGAPASRIQSKD 185
E+ A+ ++GFPT+ +F N ++ ++ G + IV +++K+ G + I+S +
Sbjct: 102 DEKNKPLATKYEIQGFPTLKIFRNQGKNIQEYKGPREAEGIVEYLKKQVGPASKEIKSPE 161
Query: 186 SAEEFLKKDQTFAVGLFKNFEGAEYEEFVKAATS-ENEVQFVETNDRNVAKILFPGIASE 244
A + + + VG+F G EY F++ A ++ F T N L G A+
Sbjct: 162 DATNLIDDKKIYIVGIFSELSGTEYTNFIEVAEKLRSDYDFGHTLHAN---HLPRGDAAV 218
Query: 245 EQFLGLVKSEPEKFEKFNGAFEEKEIIQFVELNKFPLITVFTDLNSGKVY------GSPI 298
E+ L + ++ + F+ + +F++ + P + F Y S
Sbjct: 219 ERPLVRLFKPFDELVVDSKDFDVTALEKFIDASSTPKVVTFDKNPDNHPYLLKFFQSSAA 278
Query: 299 KLQVFTFAEAYDFEDLESMIQEVARGFKTKIMLIYVDTAEEKLAKPFLTLYGLEPEKPTV 358
K +F FE +S+ A FK K + + E ++ +GL ++ +
Sbjct: 279 KAMLFLNFSTGPFESFKSVYYGAAEEFKDKEIKFLIGDIE--ASQGAFQYFGLREDQVPL 336
Query: 359 TAFDTSKGTKYLMEAEINAKNLQDFCLSLLEGTLPPYFRSEPVPE-EKGPIEKVVGRTFD 417
+ K+L +A + + + +G L P+ +SEP+PE P++ VV
Sbjct: 337 IIIQDGESKKFL-KAHVEPDQIVSWLKEYFDGKLSPFRKSEPIPEVNDEPVKVVVADNVH 395
Query: 418 SSVLESPQNVFLEVHAPWCVDCEAISKNVEKLAKHFNDLGQTNLKFARIDASVNEHP-KL 476
V +S +NV +E +APWC C+ ++ +++ A ++ A++DA+ N+ P +
Sbjct: 396 DFVFKSGKNVLVEFYAPWCGHCKKLAPILDEAATTLK--SDKDVVIAKMDATANDVPSEF 453
Query: 477 QINNYPTLLLYPAQDKSNPIKLSKKSNLKDMAKFVKEKLQIA----DVETVAAGDIVKDE 532
+ YPTL K P + + ++ ++ F+K+ + A + A + +KDE
Sbjct: 454 DVQGYPTLYFVTPSGKMVPYESGRTAD--EIVDFIKKNKETAGQAKEKAESAPAEPLKDE 511
Query: 533 L 533
L
Sbjct: 512 L 512
>Os02g0554900 Similar to Protein disulfide isomerase (Fragment)
Length = 545
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 107/436 (24%), Positives = 183/436 (41%), Gaps = 30/436 (6%)
Query: 70 VLVLDNDNARRAVEENAEVLLLGYAPWCERSAQLMPRFXXXXXXXXXXXXXXXFAKLDG- 128
VL LD N V + +++ YAPWC QL P + AK+D
Sbjct: 80 VLTLDAGNFTEVVGAHDFIVVEFYAPWCGHCNQLAPEYEAAAAALRSHDPPVVLAKVDAS 139
Query: 129 -ERYPKAASAVGVKGFPTVLLFVN--GTEHQFTGLHTKDAIVTWVRKKTGAPASRIQSKD 185
+ A GV+G+PT+ + + H + G IV +++++ G + I +
Sbjct: 140 ADLNRGLAGEHGVQGYPTIRILRDRGARSHNYAGPRDAAGIVAYLKRQAGPASVEIAASA 199
Query: 186 SAE--EFLKKDQTFAVGLFKNFEGAEYEEFVKAATS-ENEVQFVETNDRNVAKILFPGIA 242
S + + D VG+F G+E+E F+ A + F T D A +L G
Sbjct: 200 SPPAADSIANDGVVVVGVFPELSGSEFESFMAVAEKMRADYDFRHTTD---AGVLPRGDR 256
Query: 243 S-EEQFLGLVKSEPEKFEKFNGAFEEKEIIQFVELNKFPLITVFTDLNSGKVY------G 295
+ + L K E F + F+ + +F+E + FP + F + + Y
Sbjct: 257 TVRGPLVRLFKPFDELFVD-SQDFDRDALEKFIESSGFPTVVTFDTSPANQKYLLKYFDN 315
Query: 296 SPIKLQVFTFAEAYDFEDLESMIQEVARGFKTK-IMLIYVDTAEEKLAKPFLTLYGL-EP 353
+ K +F E+ + E A + I + D + A +GL E
Sbjct: 316 AGTKAMLFLSFSDDRAEEFRTQFHEAANQYSANNISFLIGDVTASQGA---FQYFGLKES 372
Query: 354 EKPTVTAFDTSKGTKYLMEAEINAKNLQDFCLSLLEGTLPPYFRSEPVPE-EKGPIEKVV 412
E P V F + +KY+ + + + + EGTL P+ +SEP+PE P++ VV
Sbjct: 373 EVPLV--FILASKSKYI-KPTVEPDQILPYLKEFTEGTLAPHVKSEPIPEVNDQPVKTVV 429
Query: 413 GRTFDSSVLESPQNVFLEVHAPWCVDCEAISKNVEKLAKHFNDLGQTNLKFARIDASVNE 472
V S +NV LE +APWC C+ ++ +E++A D ++ A++D + N+
Sbjct: 430 ADNLREVVFNSGKNVLLEFYAPWCGHCQKLAPILEEVAVSLKD--DEDVVIAKMDGTAND 487
Query: 473 HPK-LQINNYPTLLLY 487
P + YP++ Y
Sbjct: 488 VPSDFAVEGYPSMYFY 503
>Os02g0550300 Similar to Protein disulfide isomerase
Length = 425
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 94/217 (43%), Gaps = 7/217 (3%)
Query: 70 VLVLDNDNARRAVEENAEVLLLGYAPWCERSAQLMPRFXXXXXXXXXXXXXXXFAKLDGE 129
VL LD+ N AV + + YAPWC +L P+ AK++ +
Sbjct: 48 VLELDDGNFDAAVRAAGLLFVDFYAPWCGHCKRLAPQLDEAAPVLAGLSTPIVVAKVNAD 107
Query: 130 RYPKAASAVGVKGFPTVLLFVNGTEHQFTGLHTKDAIVTWVRKKTGAPASRIQSKDSAEE 189
+Y K S GV GFPT++LF +GT ++TG D +V + KK AP + DSA +
Sbjct: 108 KYKKLGSKYGVDGFPTLMLFDHGTPTEYTGSRKADLLVENL-KKLVAPDVSVLESDSAIK 166
Query: 190 FLKKDQTFAVGLFKNFEGAEYEEFVKAATSENEVQFVETNDRNVAKILFPGIASEEQFLG 249
+D LF F E A +N F D + ++F ++
Sbjct: 167 SFVEDAGMGFPLFLGFGVDESLIVEYGAKYKNRAWFSVAKDFSEDMMVFYDF---DKVPA 223
Query: 250 LVKSEPEKFEK--FNGAFEEKEIIQ-FVELNKFPLIT 283
LV P+ E+ F G F++ ++ F+ + PL+
Sbjct: 224 LVSVNPKYREQSIFYGPFDDGAFLEDFIRNSLLPLVV 260
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.134 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,689,867
Number of extensions: 530133
Number of successful extensions: 1439
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1419
Number of HSP's successfully gapped: 6
Length of query: 533
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 427
Effective length of database: 11,501,117
Effective search space: 4910976959
Effective search space used: 4910976959
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)