Os02g0100100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein disulphide isomerase family protein.
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Os02g0100100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein disulphide isomerase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.42 | 0.299 | 11.9 | 0.51 | 1.58 | -0.59 | -0.0632 | -0.0955 | 0.297 | 22.2 | 75 | 1250 | -- | -- |
| 40.43 | 0.296 | 11.9 | 0.514 | 1.59 | -0.599 | -0.0781 | -- | 0.297 | 22.2 | 75 | 1249 | -- | -- |
| 40.43 | 0.296 | 11.9 | 0.51 | 1.58 | -0.589 | -- | -0.114 | 0.298 | 22.2 | 75 | 1249 | -- | -- |
| 40.45 | 0.296 | 11.9 | 0.518 | 1.58 | -0.598 | -- | -- | 0.297 | 22.2 | 75 | 1251 | -- | -- |
| 156 | 0.582 | 11.9 | 0.425 | -- | -1.11 | -- | 0.822 | 0.35 | -- | 96.63 | 2 | -- | -- |
| 48.62 | 0.327 | 11.9 | 0.403 | 1.52 | -- | -0.165 | -- | 0.34 | 22.1 | -- | -- | -- | -- |
| 48.72 | 0.327 | 11.9 | 0.41 | 1.52 | -- | -- | -- | 0.341 | 22.1 | -- | -- | -- | -- |
| 155.45 | 0.581 | 11.9 | 0.373 | -- | 1.14 | -- | -- | 0.325 | -- | 172.6 | 772 | -- | -- |
| 47.47 | 0.321 | 11.9 | -- | 1.6 | -0.549 | -- | -- | 0.308 | 22.3 | 172.6 | 1216 | -- | -- |
| 187.9 | 0.641 | 11.9 | 0.43 | -- | -- | -- | -- | 0.342 | -- | -- | -- | -- | -- |
| 53.15 | 0.341 | 11.9 | -- | 1.52 | -- | -- | -- | 0.295 | 22.1 | -- | -- | -- | -- |
| 159.1 | 0.587 | 11.9 | -- | -- | 1.16 | -- | -- | 0.283 | -- | 165.8 | 779 | -- | -- |
| 192.77 | 0.648 | 11.9 | -- | -- | -- | -- | -- | 0.295 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.25 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 40.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 40.38 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 12 | 40.54 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 20 | 40.66 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 21 | 40.68 | humidity | 80 | 1440 | < th | dose dependent | rect. | 10 | 7 |
| 23 | 40.68 | humidity | 80 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 33 | 40.72 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 55 | 40.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 66 | 40.86 | humidity | 80 | 1440 | < th | dose dependent | sin | 0 | NA |
| 70 | 40.87 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 118 | 40.99 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 24 | 8 |
| 145 | 41.05 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 1 | 8 |
| 165 | 41.09 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 171 | 41.09 | humidity | 70 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 176 | 41.12 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 182 | 41.13 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 199 | 41.14 | humidity | 70 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 246 | 41.16 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 13 |
| 258 | 41.18 | humidity | 70 | 1440 | < th | dose dependent | no | NA | NA |
| 432 | 41.23 | humidity | 70 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 438 | 41.25 | humidity | 60 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 439 | 41.25 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 450 | 41.26 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 456 | 41.27 | humidity | 60 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 457 | 41.27 | humidity | 60 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 480 | 41.29 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 503 | 41.30 | humidity | 60 | 1440 | > th | dose independent | sin | 20 | NA |
| 505 | 41.30 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 5 |
| 526 | 41.32 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 529 | 41.32 | humidity | 60 | 1440 | > th | dose independent | rect. | 4 | 14 |
| 557 | 41.33 | humidity | 60 | 1440 | < th | dose independent | sin | 21 | NA |
| 562 | 41.33 | humidity | 60 | 1440 | < th | dose independent | rect. | 9 | 9 |
| 585 | 41.33 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 586 | 41.33 | humidity | 60 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 674 | 41.36 | humidity | 60 | 1440 | > th | dose independent | no | NA | NA |
| 749 | 41.36 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 754 | 41.36 | humidity | 60 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 760 | 41.36 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 765 | 41.37 | humidity | 60 | 1440 | < th | dose independent | no | NA | NA |
| 916 | 41.38 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 926 | 41.39 | humidity | 60 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 947 | 41.39 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 3 |
| 959 | 41.40 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 16 |
| 993 | 41.41 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 11 |