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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0554900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protein disulfide isomerase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.93 (0.0441) R2 : 0.584
β1 : 3.06 (0.181) R2dD : 0.361 R2D : 0.292
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.14 (0.224) R2dE : 0.212 R2E : -0.0335
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.88 (0.827) R2dD*E : 0.0499 R2D*E : 0.0899
γ1 : 1.02 (0.0961) R2dN8 : 0.155 R2N8 : -0.00879
σ : 0.798
deviance : 293.47
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 2.186
memory length : 1589
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
280.46 0.787 3.95 3.15 0.978 2.72 2.04 4.13 1.01 0.0437 1.701 1452 -- --
291.35 0.795 3.89 3.57 0.862 2.14 2.33 -- 1.08 23.8 2.256 1475 -- --
289.53 0.793 3.95 3.01 0.416 2.8 -- 4.59 0.985 23.8 2.091 1547 -- --
311.55 0.822 3.88 3.49 0.576 2.27 -- -- 1.12 23.8 2.461 1530 -- --
293.47 0.798 3.93 3.06 -- 3.14 -- 4.88 1.02 -- 2.186 1589 -- --
342.95 0.868 3.96 3.18 1.05 -- 1.99 -- 0.818 23.9 -- -- -- --
359.87 0.888 3.96 3.1 1.04 -- -- -- 0.808 0.112 -- -- -- --
317.41 0.83 3.87 3.54 -- 2.76 -- -- 1.14 -- 2.516 1606 -- --
590.17 1.13 4.02 -- 0.605 1.4 -- -- 0.618 22.7 10 1688 -- --
428.2 0.967 3.94 3.14 -- -- -- -- 0.823 -- -- -- -- --
613.71 1.16 4.04 -- 1.08 -- -- -- 0.462 0.271 -- -- -- --
609.06 1.15 3.96 -- -- 1.81 -- -- 0.708 -- 9.67 1679 -- --
687.73 1.22 4.02 -- -- -- -- -- 0.475 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 264.67 precipitation 0.1 43200 > th dose dependent rect. 19 2
2 266.04 humidity 80.0 43200 > th dose independent rect. 6 1
3 266.35 humidity 80.0 43200 < th dose independent rect. 5 3
4 266.64 humidity 80.0 43200 < th dose independent rect. 6 1
6 267.72 precipitation 0.1 43200 < th dose independent rect. 17 1
7 267.72 precipitation 0.1 43200 < th dose dependent rect. 17 1
8 267.93 precipitation 0.1 43200 > th dose independent rect. 17 1
9 268.07 wind 9.0 43200 > th dose dependent rect. 19 2
10 268.15 wind 9.0 43200 > th dose dependent rect. 19 4
14 268.59 wind 9.0 43200 > th dose independent rect. 19 2
16 269.13 precipitation 0.1 43200 > th dose independent rect. 19 1
19 269.62 wind 9.0 43200 < th dose independent rect. 19 2
20 269.65 humidity 80.0 14400 > th dose independent rect. 15 3
22 269.85 wind 9.0 43200 > th dose dependent rect. 19 9
23 269.86 humidity 80.0 14400 > th dose independent rect. 14 5
24 269.96 precipitation 0.1 43200 < th dose independent rect. 19 1
25 269.96 precipitation 0.1 43200 < th dose dependent rect. 19 1
26 270.16 wind 9.0 43200 > th dose dependent rect. 19 6
27 270.36 humidity 80.0 14400 > th dose independent rect. 17 1
38 271.02 precipitation 0.1 43200 > th dose dependent rect. 16 2
39 271.18 temperature 30.0 43200 > th dose dependent rect. 12 1
44 271.63 humidity 80.0 14400 < th dose independent rect. 14 5
45 271.64 temperature 30.0 43200 > th dose dependent rect. 9 4
61 271.66 wind 3.0 43200 > th dose dependent rect. 15 22
65 271.75 wind 9.0 43200 > th dose independent rect. 19 9
66 271.77 wind 9.0 43200 > th dose independent rect. 19 6
68 271.83 temperature 25.0 43200 > th dose dependent rect. 23 1
70 271.88 wind 5.0 43200 < th dose independent rect. 15 21
78 272.18 temperature 30.0 43200 > th dose dependent rect. 9 1
82 272.24 wind 3.0 43200 > th dose dependent rect. 6 1
83 272.25 humidity 80.0 43200 > th dose dependent rect. 20 1
86 272.33 temperature 30.0 43200 < th dose independent rect. 9 1
87 272.34 temperature 25.0 43200 > th dose dependent rect. 1 1
88 272.43 humidity 80.0 43200 > th dose independent rect. 23 1
89 272.44 temperature 25.0 43200 > th dose dependent rect. 23 3
110 272.55 temperature 30.0 43200 > th dose dependent sin 8 NA
133 272.70 wind 5.0 43200 > th dose independent rect. 15 21
140 272.79 temperature 30.0 43200 < th dose independent rect. 5 5
143 272.80 temperature 30.0 43200 < th dose independent rect. 19 15
144 272.81 wind 5.0 43200 < th dose independent rect. 15 19
147 272.83 temperature 30.0 43200 < th dose independent rect. 2 8
150 272.84 temperature 30.0 43200 < th dose independent rect. 21 13
167 272.99 temperature 30.0 43200 > th dose independent rect. 9 2
203 273.14 wind 9.0 43200 < th dose dependent rect. 17 20
237 273.34 wind 7.0 43200 < th dose dependent sin 4 NA
238 273.38 wind 9.0 43200 < th dose independent rect. 19 9
240 273.43 wind 5.0 43200 > th dose independent rect. 15 19
264 273.51 wind 9.0 43200 < th dose independent rect. 19 6
274 273.58 radiation 1.0 43200 < th dose dependent rect. 21 4
285 273.71 radiation 1.0 43200 < th dose dependent rect. 21 7
292 273.80 wind 7.0 43200 < th dose dependent rect. 5 8
310 273.88 wind 1.0 43200 > th dose dependent sin 4 NA
317 274.00 wind 7.0 43200 < th dose dependent rect. 3 12
319 274.01 wind 5.0 43200 < th dose independent rect. 3 19
321 274.03 wind 5.0 43200 < th dose independent rect. 1 21
328 274.06 humidity 80.0 43200 > th dose dependent rect. 19 3
333 274.08 wind 3.0 43200 > th dose dependent sin 2 NA
348 274.18 wind 5.0 43200 > th dose independent rect. 3 19
361 274.26 humidity 80.0 43200 < th dose independent rect. 22 10
389 274.41 wind 9.0 43200 < th dose dependent rect. 18 16
412 274.48 wind 5.0 43200 < th dose independent rect. 17 23
421 274.53 wind 1.0 43200 > th dose dependent rect. 5 8
443 274.61 wind 3.0 43200 > th dose dependent rect. 24 22
493 274.74 wind 3.0 43200 > th dose dependent rect. 3 13
512 274.82 wind 3.0 43200 > th dose dependent rect. 20 23
517 274.85 wind 1.0 43200 > th dose dependent rect. 5 5
529 274.88 wind 5.0 43200 < th dose independent no NA NA
535 274.89 wind 5.0 43200 > th dose independent rect. 17 23
546 274.93 wind 3.0 43200 > th dose dependent rect. 3 20
568 274.98 wind 3.0 43200 > th dose dependent rect. 3 23
589 275.02 wind 5.0 43200 < th dose independent sin 2 NA
625 275.17 temperature 30.0 43200 > th dose independent sin 8 NA
638 275.18 wind 1.0 43200 > th dose dependent rect. 24 16
660 275.23 temperature 30.0 43200 < th dose independent sin 8 NA
661 275.23 wind 3.0 43200 > th dose dependent no NA NA
668 275.25 wind 5.0 43200 > th dose independent no NA NA
669 275.25 wind 5.0 43200 < th dose independent rect. 20 23
672 275.27 wind 3.0 43200 > th dose independent rect. 4 9
675 275.28 wind 3.0 43200 > th dose dependent rect. 24 18
682 275.31 wind 5.0 43200 < th dose independent rect. 11 23
700 275.36 wind 9.0 43200 < th dose dependent rect. 5 5
765 275.59 wind 3.0 43200 < th dose independent rect. 4 6
784 275.60 wind 5.0 43200 > th dose independent rect. 11 23
800 275.64 temperature 30.0 43200 > th dose dependent no NA NA
911 275.67 wind 5.0 43200 > th dose independent sin 2 NA
924 275.70 wind 3.0 43200 > th dose independent rect. 4 6
935 275.73 wind 3.0 43200 < th dose independent rect. 4 9
969 275.77 wind 3.0 43200 > th dose dependent rect. 11 23