Os04g0436300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein disulfide-isomerase precursor (EC 5.3.4.1) (PDI).
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Os04g0436300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein disulfide-isomerase precursor (EC 5.3.4.1) (PDI).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 111.02 | 0.495 | 7.3 | -1.93 | 1.5 | 1.44 | 0.367 | -5.02 | -0.313 | 19.9 | 25.5 | 292 | -- | -- |
| 117.11 | 0.504 | 7.25 | -1.41 | 1.45 | 1.05 | -0.186 | -- | -0.254 | 19.6 | 23.8 | 391 | -- | -- |
| 111.38 | 0.492 | 7.29 | -1.91 | 1.5 | 1.43 | -- | -4.77 | -0.303 | 19.9 | 25.54 | 291 | -- | -- |
| 116.69 | 0.503 | 7.24 | -1.38 | 1.52 | 0.953 | -- | -- | -0.237 | 19.6 | 23.52 | 362 | -- | -- |
| 184.73 | 0.633 | 7.3 | -2.3 | -- | 2.52 | -- | -4.69 | -0.511 | -- | 24.5 | 501 | -- | -- |
| 132.85 | 0.54 | 7.22 | -1.18 | 1.91 | -- | 0.166 | -- | -0.109 | 19.2 | -- | -- | -- | -- |
| 132.92 | 0.54 | 7.22 | -1.19 | 1.91 | -- | -- | -- | -0.109 | 19.2 | -- | -- | -- | -- |
| 196.41 | 0.653 | 7.23 | -1.61 | -- | 2.07 | -- | -- | -0.349 | -- | 24.4 | 519 | -- | -- |
| 163.13 | 0.595 | 7.19 | -- | 1.67 | 0.651 | -- | -- | -0.0116 | 19.5 | 25.4 | 335 | -- | -- |
| 325.5 | 0.843 | 7.18 | -1.22 | -- | -- | -- | -- | -0.142 | -- | -- | -- | -- | -- |
| 170.09 | 0.61 | 7.19 | -- | 1.92 | -- | -- | -- | 0.0232 | 19.1 | -- | -- | -- | -- |
| 262.09 | 0.754 | 7.18 | -- | -- | 1.86 | -- | -- | -0.13 | -- | 24.6 | 499 | -- | -- |
| 364.93 | 0.892 | 7.15 | -- | -- | -- | -- | -- | -0.00666 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.02 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 11 |
| 46 | 109.72 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 6 | 6 |
| 58 | 110.07 | wind | 1.0 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 63 | 110.26 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 70 | 110.38 | temperature | 10.0 | 720 | > th | dose dependent | sin | 3 | NA |
| 72 | 110.42 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 2 | 20 |
| 74 | 110.45 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 9 | 13 |
| 76 | 110.46 | temperature | 25.0 | 270 | > th | dose dependent | sin | 23 | NA |
| 88 | 110.56 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 89 | 110.58 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 103 | 110.67 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 109 | 110.75 | temperature | 15.0 | 270 | > th | dose dependent | sin | 23 | NA |
| 137 | 110.89 | wind | 1.0 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 173 | 111.08 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 176 | 111.10 | temperature | 25.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 193 | 111.19 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 11 |
| 212 | 111.26 | temperature | 25.0 | 270 | > th | dose dependent | no | NA | NA |
| 220 | 111.27 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 298 | 111.62 | temperature | 25.0 | 270 | > th | dose independent | rect. | 9 | 10 |
| 308 | 111.67 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 12 | 10 |
| 347 | 111.86 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 355 | 111.91 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 5 |
| 359 | 111.93 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 389 | 112.13 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 406 | 112.23 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 412 | 112.26 | temperature | 25.0 | 90 | > th | dose dependent | sin | 19 | NA |
| 414 | 112.26 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 467 | 112.53 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 11 | 8 |
| 472 | 112.56 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 13 | 6 |
| 479 | 112.57 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 512 | 112.65 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 6 | 13 |
| 513 | 112.66 | temperature | 30.0 | 720 | < th | dose dependent | sin | 3 | NA |
| 518 | 112.67 | temperature | 25.0 | 720 | > th | dose independent | rect. | 6 | 8 |
| 526 | 112.69 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 560 | 112.74 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 22 | NA |
| 724 | 113.00 | temperature | 25.0 | 720 | < th | dose independent | rect. | 6 | 6 |
| 734 | 113.01 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 810 | 113.12 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 10 | 23 |
| 880 | 113.21 | temperature | 25.0 | 4320 | > th | dose dependent | no | NA | NA |
| 895 | 113.24 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 915 | 113.26 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 17 | 23 |
| 934 | 113.29 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 968 | 113.37 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 978 | 113.39 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 10 | 17 |
| 980 | 113.40 | temperature | 25.0 | 90 | > th | dose independent | rect. | 12 | 10 |
| 986 | 113.40 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 18 |