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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0550300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protein disulfide isomerase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.21 (0.0327) R2 : 0.523
β1 : 2.03 (0.12) R2dD : 0.313 R2D : 0.286
β2 : 1.27 (0.0849) R2dC : 0.234 R2C : 0.219
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.159 (0.0697) R2dN8 : 0.00725 R2N8 : -0.0129
σ : 0.614
deviance : 171.92
__
_____
C
peak time of C : 17.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
159.1 0.593 4.2 2.08 1.28 -1.04 1.07 -1.97 0.0818 17 22.9 1023 -- --
163.43 0.595 4.23 1.85 1.28 -0.683 0.958 -- 0.0457 17.1 23.17 1015 -- --
161.89 0.593 4.2 2.06 1.28 -1.03 -- -1.81 0.0823 16.9 22.8 944 -- --
165.69 0.6 4.23 1.85 1.28 -0.668 -- -- 0.0365 17 23.9 998 -- --
206.36 0.669 4.23 1.71 -- -1.78 -- -0.653 -0.0834 -- 34.6 250 -- --
169.17 0.61 4.21 2.03 1.26 -- 1.06 -- 0.153 17.2 -- -- -- --
171.92 0.614 4.21 2.03 1.27 -- -- -- 0.159 17.2 -- -- -- --
206.96 0.67 4.25 1.62 -- -1.81 -- -- -0.117 -- 53.08 250 -- --
193.58 0.648 4.34 -- 1.27 -1.55 -- -- -0.432 17.1 21.78 47520 -- --
255.9 0.747 4.19 1.99 -- -- -- -- 0.127 -- -- -- -- --
280.7 0.784 4.26 -- 1.23 -- -- -- -0.0677 17.2 -- -- -- --
271.36 0.767 4.3 -- -- -2.35 -- -- -0.357 -- 75.85 255 -- --
360.04 0.886 4.24 -- -- -- -- -- -0.0938 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 151.84 temperature 10.0 90 > th dose dependent rect. 23 18
6 153.58 precipitation 0.1 1440 < th dose independent rect. 5 2
7 153.58 precipitation 0.1 1440 < th dose dependent rect. 5 2
8 153.62 radiation 10.0 90 < th dose dependent rect. 9 14
10 153.71 atmosphere 1000.0 90 > th dose independent rect. 23 18
11 153.72 temperature 10.0 270 > th dose dependent rect. 21 19
14 153.84 precipitation 0.1 1440 < th dose independent rect. 5 8
15 153.84 precipitation 0.1 1440 < th dose dependent rect. 5 8
18 153.92 temperature 20.0 90 > th dose independent rect. 23 18
22 154.31 precipitation 0.1 14400 < th dose independent rect. 17 1
23 154.31 precipitation 0.1 14400 < th dose dependent rect. 17 1
24 154.33 wind 9.0 90 < th dose dependent rect. 23 18
26 154.38 precipitation 0.1 1440 > th dose independent rect. 5 2
29 154.50 precipitation 0.1 1440 < th dose independent rect. 5 6
30 154.50 precipitation 0.1 1440 < th dose dependent rect. 5 6
31 154.51 humidity 80.0 1440 < th dose independent rect. 11 1
32 154.53 precipitation 0.1 1440 < th dose independent rect. 5 4
33 154.53 precipitation 0.1 1440 < th dose dependent rect. 5 4
34 154.54 radiation 10.0 90 < th dose dependent rect. 16 7
35 154.64 wind 1.0 43200 > th dose dependent rect. 1 1
36 154.65 humidity 80.0 1440 > th dose independent rect. 11 1
39 154.66 precipitation 0.1 1440 > th dose dependent rect. 5 6
45 154.75 precipitation 0.1 1440 > th dose dependent rect. 5 4
50 154.81 temperature 30.0 90 < th dose independent rect. 17 6
52 154.90 precipitation 0.1 1440 > th dose dependent rect. 5 2
56 154.99 precipitation 0.1 1440 > th dose independent rect. 5 6
59 155.00 precipitation 0.1 14400 > th dose independent rect. 17 1
62 155.05 wind 5.0 90 < th dose independent rect. 18 5
65 155.06 precipitation 0.1 1440 > th dose independent rect. 5 4
70 155.10 radiation 1.0 90 < th dose independent rect. 8 15
74 155.15 humidity 60.0 90 > th dose independent rect. 17 6
78 155.17 radiation 1.0 90 < th dose independent rect. 16 7
93 155.40 wind 9.0 90 < th dose independent rect. 23 18
100 155.49 precipitation 0.1 14400 > th dose dependent rect. 17 1
108 155.57 wind 9.0 90 < th dose dependent rect. 17 6
115 155.65 wind 3.0 14400 < th dose dependent rect. 1 2
116 155.66 humidity 50.0 90 > th dose dependent rect. 17 6
130 155.82 precipitation 0.1 4320 > th dose dependent rect. 1 16
131 155.83 atmosphere 1010.0 90 < th dose independent rect. 23 18
137 155.88 wind 1.0 43200 > th dose independent rect. 23 7
139 155.90 wind 5.0 270 < th dose independent rect. 18 2
142 155.94 wind 1.0 43200 > th dose independent rect. 1 7
146 155.96 wind 1.0 43200 > th dose independent rect. 4 3
149 155.97 wind 3.0 14400 < th dose dependent rect. 23 4
154 155.98 atmosphere 995.0 90 > th dose dependent rect. 17 6
156 155.99 temperature 10.0 90 > th dose independent rect. 17 6
161 155.99 atmosphere 1000.0 270 > th dose independent rect. 21 19
165 156.02 atmosphere 1015.0 90 < th dose independent rect. 17 6
168 156.04 wind 1.0 90 > th dose independent rect. 17 6
178 156.11 humidity 70.0 1440 > th dose dependent rect. 10 2
185 156.14 precipitation 0.1 4320 < th dose independent rect. 1 16
188 156.14 precipitation 0.1 4320 < th dose dependent rect. 1 16
190 156.17 precipitation 0.1 4320 > th dose dependent rect. 1 13
198 156.23 atmosphere 995.0 90 > th dose independent rect. 17 6
202 156.25 precipitation 0.1 4320 > th dose independent rect. 1 16
206 156.27 precipitation 0.1 4320 > th dose dependent rect. 1 8
237 156.41 temperature 25.0 90 > th dose independent rect. 12 6
240 156.43 temperature 20.0 270 > th dose independent rect. 21 19
252 156.48 wind 1.0 43200 < th dose independent rect. 4 4
257 156.50 precipitation 0.1 90 < th dose independent rect. 17 6
259 156.50 precipitation 0.1 90 < th dose dependent rect. 17 6
264 156.53 wind 1.0 43200 < th dose independent rect. 23 8
267 156.54 precipitation 0.1 4320 < th dose independent rect. 1 8
270 156.54 precipitation 0.1 4320 < th dose dependent rect. 1 8
275 156.58 humidity 90.0 4320 > th dose dependent rect. 8 1
292 156.62 wind 1.0 43200 < th dose independent rect. 23 6
301 156.65 precipitation 0.1 4320 < th dose independent rect. 1 13
302 156.65 precipitation 0.1 4320 < th dose dependent rect. 1 13
307 156.67 precipitation 0.1 90 < th dose independent rect. 23 18
309 156.67 precipitation 0.1 90 < th dose dependent rect. 23 18
323 156.70 precipitation 0.1 4320 > th dose independent rect. 1 8
325 156.71 precipitation 0.1 14400 > th dose dependent rect. 19 1
332 156.72 temperature 20.0 10 > th dose independent rect. 23 19
344 156.75 precipitation 0.1 4320 > th dose independent rect. 1 13
347 156.76 temperature 25.0 270 > th dose independent rect. 10 6
360 156.80 temperature 25.0 90 > th dose independent rect. 9 9
361 156.80 temperature 25.0 90 > th dose independent rect. 5 13
362 156.80 wind 1.0 90 > th dose independent rect. 3 20
367 156.82 wind 1.0 720 > th dose independent rect. 11 9
375 156.84 precipitation 0.1 270 < th dose independent rect. 1 11
376 156.84 precipitation 0.1 270 < th dose dependent rect. 1 11
386 156.87 wind 3.0 14400 < th dose independent rect. 23 3
389 156.87 wind 1.0 43200 < th dose dependent rect. 3 5
413 156.93 precipitation 0.1 14400 > th dose independent rect. 19 1
428 156.98 precipitation 0.1 14400 < th dose independent rect. 19 1
430 156.98 precipitation 0.1 14400 < th dose dependent rect. 19 1
438 157.00 precipitation 0.1 1440 < th dose independent rect. 16 1
439 157.00 precipitation 0.1 1440 < th dose dependent rect. 16 1
449 157.03 precipitation 0.1 14400 > th dose dependent rect. 5 12
450 157.03 temperature 10.0 30 > th dose dependent rect. 23 23
452 157.04 precipitation 0.1 4320 < th dose independent rect. 3 11
455 157.04 precipitation 0.1 4320 < th dose dependent rect. 3 11
510 157.15 precipitation 0.1 4320 > th dose independent rect. 3 11
523 157.17 radiation 1.0 10 < th dose dependent rect. 17 7
545 157.24 precipitation 0.1 1440 < th dose independent rect. 19 6
547 157.24 precipitation 0.1 1440 < th dose dependent rect. 19 6
560 157.27 precipitation 0.1 4320 > th dose dependent sin 5 NA
567 157.28 wind 9.0 270 < th dose independent rect. 21 19
569 157.29 wind 3.0 43200 < th dose dependent rect. 5 1
571 157.29 temperature 30.0 90 < th dose dependent rect. 3 20
574 157.30 radiation 1.0 10 < th dose dependent rect. 11 13
593 157.34 radiation 1.0 10 < th dose dependent rect. 6 18
606 157.37 humidity 90.0 4320 > th dose independent rect. 13 1
612 157.39 atmosphere 1000.0 10 > th dose independent rect. 24 17
634 157.46 humidity 80.0 14400 > th dose dependent rect. 13 1
637 157.47 precipitation 0.1 4320 < th dose independent sin 4 NA
639 157.47 precipitation 0.1 4320 < th dose dependent sin 4 NA
644 157.48 temperature 20.0 720 > th dose independent rect. 4 13
648 157.49 wind 3.0 14400 > th dose independent rect. 23 3
659 157.50 precipitation 0.1 14400 > th dose dependent rect. 9 8
660 157.50 wind 1.0 43200 < th dose dependent rect. 2 11
683 157.54 precipitation 0.1 4320 > th dose independent sin 4 NA
690 157.55 temperature 25.0 90 > th dose independent rect. 18 5
691 157.55 radiation 1.0 10 < th dose independent rect. 11 13
722 157.59 temperature 10.0 270 > th dose dependent rect. 5 11
731 157.60 temperature 10.0 10 > th dose dependent rect. 12 15
744 157.62 wind 1.0 720 > th dose independent rect. 9 10
756 157.64 wind 1.0 43200 < th dose dependent rect. 2 9
764 157.65 radiation 1.0 10 < th dose dependent rect. 13 11
768 157.66 atmosphere 1000.0 270 > th dose independent rect. 21 10
772 157.66 radiation 40.0 90 < th dose dependent rect. 23 12
783 157.69 precipitation 0.1 14400 < th dose independent rect. 9 8
789 157.69 precipitation 0.1 14400 < th dose dependent rect. 9 8
805 157.72 precipitation 0.1 14400 > th dose independent rect. 9 8
836 157.75 precipitation 0.1 14400 < th dose independent rect. 7 10
843 157.75 precipitation 0.1 14400 < th dose dependent rect. 7 10
852 157.77 precipitation 0.1 14400 > th dose independent rect. 7 10
885 157.83 precipitation 0.1 1440 < th dose independent rect. 16 3
887 157.83 precipitation 0.1 1440 < th dose dependent rect. 16 3
899 157.86 precipitation 0.1 14400 > th dose dependent rect. 12 5
904 157.87 wind 7.0 270 < th dose dependent rect. 18 2
912 157.89 temperature 25.0 270 > th dose independent rect. 12 2
914 157.89 precipitation 0.1 14400 < th dose independent rect. 12 5
915 157.89 radiation 1.0 10 < th dose independent rect. 13 11
917 157.89 precipitation 0.1 14400 < th dose dependent rect. 12 5
943 157.93 temperature 15.0 270 > th dose dependent rect. 10 6
945 157.94 precipitation 0.1 4320 > th dose independent rect. 7 1
950 157.94 precipitation 0.1 4320 > th dose dependent rect. 7 1
954 157.95 precipitation 0.1 14400 > th dose independent rect. 12 5
977 157.98 temperature 20.0 90 > th dose independent rect. 23 8
980 157.98 precipitation 0.1 14400 < th dose independent rect. 3 17
983 157.98 precipitation 0.1 14400 < th dose dependent rect. 3 17
988 157.99 wind 9.0 270 < th dose dependent rect. 11 5
991 158.00 atmosphere 1000.0 90 > th dose independent rect. 23 10
993 158.00 precipitation 0.1 14400 > th dose independent rect. 3 17