Os06g0163400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thioredoxin domain 2 containing protein.
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Os06g0163400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thioredoxin domain 2 containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 338.11 | 0.864 | 6.11 | -4.96 | 1.7 | 3.11 | 1.09 | -8.34 | -0.833 | 22.6 | 25.82 | 1408 | -- | -- |
| 364.9 | 0.89 | 6.03 | -3.85 | 1.79 | 3.25 | 0.949 | -- | -1.17 | 22.7 | 17.33 | 7174 | -- | -- |
| 342.39 | 0.862 | 6.11 | -4.99 | 1.67 | 3.18 | -- | -8.58 | -0.766 | 22.5 | 26.14 | 1378 | -- | -- |
| 367.36 | 0.893 | 6.01 | -3.59 | 1.75 | 3.01 | -- | -- | -1.06 | 22.6 | 17.93 | 7034 | -- | -- |
| 468.6 | 1.01 | 6.07 | -4.95 | -- | 3.94 | -- | -8.3 | -0.964 | -- | 24.92 | 2307 | -- | -- |
| 591.86 | 1.14 | 5.79 | -1.87 | 1.86 | -- | 1.25 | -- | -0.118 | 22.9 | -- | -- | -- | -- |
| 598.43 | 1.15 | 5.79 | -1.92 | 1.85 | -- | -- | -- | -0.122 | 22.9 | -- | -- | -- | -- |
| 441.95 | 0.979 | 5.89 | -3.14 | -- | 3.42 | -- | -- | -0.823 | -- | 21.44 | 911 | -- | -- |
| 538.52 | 1.08 | 5.71 | -- | 1.66 | 1.83 | -- | -- | 0.239 | 22.4 | 27.7 | 1267 | -- | -- |
| 811.79 | 1.33 | 5.74 | -1.88 | -- | -- | -- | -- | -0.109 | -- | -- | -- | -- | -- |
| 695.46 | 1.23 | 5.74 | -- | 1.84 | -- | -- | -- | 0.0921 | 22.8 | -- | -- | -- | -- |
| 644.73 | 1.18 | 5.79 | -- | -- | 2.89 | -- | -- | -0.316 | -- | 22.3 | 895 | -- | -- |
| 904.97 | 1.4 | 5.7 | -- | -- | -- | -- | -- | 0.0993 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 336.57 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 2 | 336.96 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 23 | 337.64 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 9 |
| 24 | 337.64 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 31 | 337.82 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 72 | 338.97 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 83 | 339.43 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 84 | 339.44 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 118 | 340.08 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 139 | 340.55 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 23 |
| 140 | 340.56 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 146 | 340.65 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 156 | 340.85 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 23 |
| 276 | 344.45 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 292 | 344.91 | wind | 5 | 43200 | > th | dose independent | sin | 2 | NA |
| 301 | 345.37 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 312 | 345.84 | wind | 5 | 43200 | < th | dose independent | sin | 2 | NA |
| 317 | 345.95 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 322 | 346.45 | wind | 5 | 43200 | > th | dose dependent | sin | 2 | NA |
| 336 | 346.94 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 21 |
| 340 | 347.16 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 17 |
| 346 | 347.32 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 349 | 347.42 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 398 | 348.40 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 21 |
| 426 | 348.75 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 21 |
| 699 | 352.93 | wind | 5 | 43200 | > th | dose dependent | rect. | 4 | 18 |
| 708 | 353.04 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 20 |
| 759 | 353.51 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 22 |
| 917 | 354.78 | wind | 5 | 43200 | > th | dose dependent | rect. | 7 | 23 |
| 923 | 354.82 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 968 | 355.25 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 21 |
| 989 | 355.45 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 3 |