BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0155400 Os06g0155400|Os06g0155400
(384 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0155400 Conserved hypothetical protein 719 0.0
Os02g0617050 290 9e-79
Os02g0616200 157 1e-38
Os06g0155900 Conserved hypothetical protein 115 4e-26
Os08g0499400 Conserved hypothetical protein 72 9e-13
Os11g0130600 Conserved hypothetical protein 71 2e-12
Os12g0211100 Conserved hypothetical protein 68 9e-12
Os08g0496700 68 1e-11
Os12g0211000 Conserved hypothetical protein 67 2e-11
>Os06g0155400 Conserved hypothetical protein
Length = 384
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/384 (91%), Positives = 350/384 (91%)
Query: 1 MTRGGRGEDDNEVDSWVKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYFSMENR 60
MTRGGRGEDDNEVDSWVKK YFSMENR
Sbjct: 1 MTRGGRGEDDNEVDSWVKKESEWEEAGDGEEDDYSDETEYDDDDDESSDEDNDYFSMENR 60
Query: 61 DVRFASEEKWESQIMEQMKFSVSTADPFDIRTIWKGSLHVDGPCQSLDPNLLSMNNFMPQ 120
DVRFASEEKWESQIMEQMKFSVSTADPFDIRTIWKGSLHVDGPCQSLDPNLLSMNNFMPQ
Sbjct: 61 DVRFASEEKWESQIMEQMKFSVSTADPFDIRTIWKGSLHVDGPCQSLDPNLLSMNNFMPQ 120
Query: 121 LPLRMKKKNNEEPCRRAIQEIYGMFAFRDIRNSQERNFIFEYPRDRPFTLKPGSDKVQPL 180
LPLRMKKKNNEEPCRRAIQEIYGMFAFRDIRNSQERNFIFEYPRDRPFTLKPGSDKVQPL
Sbjct: 121 LPLRMKKKNNEEPCRRAIQEIYGMFAFRDIRNSQERNFIFEYPRDRPFTLKPGSDKVQPL 180
Query: 181 IQPPRGIYAIGPVVMEYHLMIKGQEEQEDRVLVDGYSIYCPSFYKERSRFHWHIDTGHCG 240
IQPPRGIYAIGPVVMEYHLMIKGQEEQEDRVLVDGYSIYCPSFYKERSRFHWHIDTGHCG
Sbjct: 181 IQPPRGIYAIGPVVMEYHLMIKGQEEQEDRVLVDGYSIYCPSFYKERSRFHWHIDTGHCG 240
Query: 241 AIDLKMAAVPNAVLATVEIEVIRLGGTHYDSLAIVVALSIIKGMYLVFDGKVSVGKLLPF 300
AIDLKMAAVPNAVLATVEIEVIRLGGTHYDSLAIVVALSIIKGMYLVFDGKVSVGKLLPF
Sbjct: 241 AIDLKMAAVPNAVLATVEIEVIRLGGTHYDSLAIVVALSIIKGMYLVFDGKVSVGKLLPF 300
Query: 301 TVCINREMHLKLFVYGYSSSQIGHGDCSPDGVVSDYDNDGFFSASEDVYYDVLNFIPQFG 360
TVCINREMHLKLFVYGYSSSQIGHGDCSPDGVVSDYDNDGFFSASEDVYYDVLNFIPQFG
Sbjct: 301 TVCINREMHLKLFVYGYSSSQIGHGDCSPDGVVSDYDNDGFFSASEDVYYDVLNFIPQFG 360
Query: 361 TYKKMSHNLEDMDVSVTVTWSSLY 384
TYKKMSHNLEDMDVSVTVTWSSLY
Sbjct: 361 TYKKMSHNLEDMDVSVTVTWSSLY 384
>Os02g0617050
Length = 448
Score = 290 bits (743), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 155/337 (45%), Positives = 214/337 (63%), Gaps = 22/337 (6%)
Query: 67 EEKWESQIMEQMKFSVSTADP-FDIRTIWKGSLHVDGPCQSLDPNLLSMNNFMPQLPL-- 123
EEKWE++I+ +M+F V A+ D +W+GSL V+G Q +DPN +S+ + PQLP
Sbjct: 110 EEKWENEILGKMEFPVPKANATCDFSFVWEGSLQVEGQFQ-VDPNRVSVEHLFPQLPKWE 168
Query: 124 -RMKKKNNEEPCRRAIQ--------------EIYGMFAFRDIRNSQERNFIFEYPRDRPF 168
R + +EPC RAIQ EIYG FAFRD+RNSQ RN IFEY R+ P
Sbjct: 169 SRWVNGDGKEPCCRAIQVFSLDLSSPSNDSMEIYGTFAFRDVRNSQLRNCIFEYSRENPC 228
Query: 169 TLKPGSDKVQPLIQPPRGIYAIGPVVMEYHLMIKGQEEQEDRVLVDGYSIYCPSFYKERS 228
L PG+ K+QPLI P RGIYA+G V++EY L+IKGQ E ED VL+DGYSIY PSFY E
Sbjct: 229 KLNPGAHKLQPLITPSRGIYAVGLVLIEYSLIIKGQIEGEDEVLIDGYSIYAPSFYGELE 288
Query: 229 RFHWHIDTGHCGAIDLKMAAVPNAVLATVEIEVIRLGGTH-YDSLAIVVALSIIKGMYLV 287
R HWHIDTGH +DL+M A+P AVL +E EV + H Y+SL I ++ +G ++
Sbjct: 289 RLHWHIDTGHFSTLDLRMVAIPRAVLVRLEFEVYHIEENHQYNSLTIAATYNMFQGSFIT 348
Query: 288 FDGKVSVGKLLPFTVCINREMHLKLFVYGYSSSQIGHGDCSPDGVVSDYDNDGFFSASED 347
F+GK+SVGKL PFT+ +N + ++ ++VY Y Q+ +PDGV+SDY E+
Sbjct: 349 FNGKLSVGKLPPFTLPVNHDGYMHIYVYAY-QDQLDDARHTPDGVISDYFPGCVRFDLEE 407
Query: 348 VYYDVLNFIPQF-GTYKKMSHNLEDMDVSVTVTWSSL 383
+ + PQ GT +M+ NL+ +++++ TWS+L
Sbjct: 408 FLCESRSLTPQKDGTSTQMADNLDGIEMAIKATWSTL 444
>Os02g0616200
Length = 373
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/272 (37%), Positives = 143/272 (52%), Gaps = 72/272 (26%)
Query: 55 FSMENRDVRFAS--EEKWESQIMEQMKFSVSTADPFDIRTIWKGSLHVDGPCQSLDPNLL 112
F E+ + +A+ EE WE QI+ QMKF + D+ W+GSL V+GP +LDPNL
Sbjct: 116 FRYEDGNPYYAADREETWEKQILRQMKFPIP-----DLSESWEGSLVVEGPF-NLDPNLT 169
Query: 113 SMNNF-----------------------MPQLP---LRMKKKNNEEPCRRAIQ------- 139
++ MP LP R ++ +EPCRRAIQ
Sbjct: 170 LTDHLSKSTSPIRVLTIQMPSVVEIVFIMPALPKWERRWLDRDGKEPCRRAIQVLGLNLS 229
Query: 140 ---------------EIYGMFAFRDIR-NSQERNFIFEYPRDRPFTLKPGSDKVQPLIQP 183
EI+ + + + +QE+ G+ +QPL+ P
Sbjct: 230 SPSNVPLEIYVHLHSEIHAIVSCATMSLTTQEKTH--------------GAHCLQPLMTP 275
Query: 184 PRGIYAIGPVVMEYHLMIKGQEEQEDRVLVDGYSIYCPSFYKERSRFHWHIDTGHCGAID 243
PRGIYA+G V++EY L+IKGQ+E+ED+VL+DGYSIY PSFY + + WHI+TGH G ID
Sbjct: 276 PRGIYAVGIVLIEYRLIIKGQKEEEDQVLIDGYSIYAPSFYADFEKLIWHINTGHFGTID 335
Query: 244 LKMAAVPNAVLATVEIEVIRLGGTH-YDSLAI 274
L + A+P AVL +E EV ++ H +DSLAI
Sbjct: 336 LTIFAIPKAVLVDLEFEVCQIEDNHEHDSLAI 367
>Os06g0155900 Conserved hypothetical protein
Length = 261
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 84/131 (64%), Gaps = 23/131 (17%)
Query: 67 EEKWESQIMEQMKFSVSTADPFD---IRTIWKGSLHVDGPCQSLDPNLLSMNNFMPQLPL 123
EE+WE+Q+MEQMKF+VS A I++GSLHV+GPC LDP++LS + +PQLP
Sbjct: 112 EERWENQVMEQMKFTVSIAKQRQNDFFCPIFEGSLHVEGPCH-LDPDILSTEHLLPQLPK 170
Query: 124 RMKK-----KNNEEPCRRAIQ--------------EIYGMFAFRDIRNSQERNFIFEYPR 164
+ + EPCRRAIQ EIYG+FAFRD+RN+Q+RN +F+Y R
Sbjct: 171 WKNRWVNGYNHRNEPCRRAIQVYDLNVSSPHDEPMEIYGIFAFRDVRNNQQRNHVFQYSR 230
Query: 165 DRPFTLKPGSD 175
D+P+ L+P D
Sbjct: 231 DKPYKLRPVRD 241
>Os08g0499400 Conserved hypothetical protein
Length = 386
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 115/254 (45%), Gaps = 37/254 (14%)
Query: 140 EIYGMFAFRDIRNSQERNFIFEYPRDRPFTLKPGSDKVQPLIQ---PPRGIYAIGPVVME 196
+IYG A RD+ + RN+IF RD PF L LI+ P RGI P V+E
Sbjct: 157 QIYGFMAARDLFDPL-RNYIFNRGRDDPFVLPGHYSDPNSLIRLSGPKRGISLENPAVIE 215
Query: 197 YHLMI-KGQEEQEDRVLVDG---YSIYCPSFYKERSRFHWHIDTGHCGAIDLKMAAVPNA 252
Y L I KG++E++D L+DG +S P R H G GA+D+ +A + N
Sbjct: 216 YDLKIKKGEDEKDDLQLIDGVAAFSDLTPFHGVYSRRIH-----GIHGAVDISLALLRNG 270
Query: 253 VLATVEIEVIRL--GGTHYDSLAIVVALSIIKGMYLVFDGK-VSVGKLLPFTVCINREMH 309
+T++I++ +L GG H L+I +S I +FDG V+ KL F V +
Sbjct: 271 KESTIQIKIPKLIHGGIH---LSISCFVSQIPEEIKLFDGTIVNPSKLRNFVVAVQLRTV 327
Query: 310 LKLFVYGYSSSQIGHGDCSPDGVVSDYDNDGFFSASEDVYYDVLNFIPQFGTYKKMSHNL 369
L L D VV+ +G +++ Y G+ +++ H
Sbjct: 328 LIL-------------DFKITPVVAAAGENG---SNQIHRYCAFKATTHAGSIQRIQHYF 371
Query: 370 EDMDVSVTVTWSSL 383
++DV V WS L
Sbjct: 372 ANIDVH--VVWSDL 383
>Os11g0130600 Conserved hypothetical protein
Length = 296
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 10/160 (6%)
Query: 140 EIYGMFAFRDIRNSQERNFIFEYPRDRPFTLKP-----GSDKVQPLIQPPRGIYAIGPVV 194
+YG FA RD + RN+IF RD PF + + + P+ P RGI V+
Sbjct: 71 HLYGYFAVRDHLDPL-RNYIFNRTRDDPFIMGQDNGVDSDNSLIPMPGPKRGIGNQARVL 129
Query: 195 MEYHLMIK-GQEEQEDRVLVDGYSIYCPSFYKERSRFHWHIDTGHCGAIDLKMAAVPNAV 253
+E+ + IK G+ +D L+DG +I C F F I+ G CGA+D+ +A + + V
Sbjct: 130 IEFDMKIKNGETRDDDFQLIDG-AIICSEFVLPNRVFTQRIE-GDCGAVDISLALLHSTV 187
Query: 254 LATVEIEVIRLGGTHYDSLAIVVALSIIKGMYLVFDGKVS 293
ATV++ + ++ G + SL++ S I +FDG +S
Sbjct: 188 EATVQVSISQVHGNGF-SLSLYSYTSRIPEKIQLFDGFIS 226
>Os12g0211100 Conserved hypothetical protein
Length = 675
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 17/161 (10%)
Query: 140 EIYGMFAFRDIRNSQERNFIFEYPRDRPFTLKPGSDKVQPLIQ---PPRGIYAIGPVVME 196
++YG A RD+ + RN++F RD PFT++ D P IQ P RGI V++E
Sbjct: 161 QLYGFMAARDLLDPL-RNYVFNRTRDDPFTIR---DVSYPFIQMTGPKRGITMNSRVMIE 216
Query: 197 YHLMIK-GQEEQEDRVLVDGYSIYC--PSFYKERSRFHWHIDTGHCG-AIDLKMAAVPNA 252
Y L IK G+ EQ+D VL+DG + + +F R H G CG A+D+ +A A
Sbjct: 217 YDLRIKRGENEQDDLVLIDGAATFSEITNFIPYIYRIH-----GDCGMAVDITLAHFILA 271
Query: 253 VLATVEIEVIRLG-GTHYDSLAIVVALSIIKGMYLVFDGKV 292
+ AT+++ + L G +L I +S + +F G +
Sbjct: 272 IEATLQVRIYELKDGCGSLNLTITCRVSHMTPQIKLFQGPI 312
>Os08g0496700
Length = 815
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 70/136 (51%), Gaps = 15/136 (11%)
Query: 140 EIYGMFAFRDIRNSQERNFIFEYPRDRPFTLKPGS----DKVQPLIQPPRGIYAIGPVVM 195
+IYG A RD+ RN++F RD PF L PG D + L P RG+ P ++
Sbjct: 153 QIYGFMAARDLYEPL-RNYVFRCSRDDPFVL-PGHYSDPDSLISLSGPKRGVSLQNPAMI 210
Query: 196 EYHLMIK-GQEEQEDRVLVDGYSIY---CPSFYKERSRFHWHIDTGHCGAIDLKMAAVPN 251
EY L IK G+EEQ+D L+DG +++ P R H G GA+D+ +A +
Sbjct: 211 EYDLKIKRGEEEQDDLQLIDGVAVFSDLTPFHGVYTQRIH-----GVHGAVDISLALLRE 265
Query: 252 AVLATVEIEVIRLGGT 267
+ T+EI V + G+
Sbjct: 266 GMECTIEIRVPEMDGS 281
>Os12g0211000 Conserved hypothetical protein
Length = 387
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 21/189 (11%)
Query: 115 NNFMPQLPLRMKKKNN---EEPCRRAIQEIYGMFAFRDIRNSQERNFIFEYPRDRPFTLK 171
+ M L++ + +N P AIQ +YG A R++ + RN++F RD PFT+
Sbjct: 140 GSMMQIFSLKLAEISNFATRAPGAGAIQ-LYGFMAVRNLLDPL-RNYVFNRTRDNPFTI- 196
Query: 172 PGSDKVQPLIQ---PPRGIYAIGPVVMEYHLMIK-GQEEQEDRVLVDGYSIYCPSFYKER 227
D P IQ P RGI V++EY + IK G+ EQ+D +LVDG + + E
Sbjct: 197 --GDVSYPFIQMTGPKRGIAMNARVMIEYDMRIKMGESEQDDLLLVDGAAT-----FSEI 249
Query: 228 SRFHWHI--DTGHCG-AIDLKMAAVPNAVLATVEIEVIRLG-GTHYDSLAIVVALSIIKG 283
+ F +I G CG A+D+++A A+ AT ++ V +L G +L I +S +
Sbjct: 250 TNFIPYIYRINGDCGMAVDIRLAHFSRAIEATAQVWVYKLKDGCGSLNLTITCHVSYMPP 309
Query: 284 MYLVFDGKV 292
+F G +
Sbjct: 310 QIKLFQGPI 318
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,748,806
Number of extensions: 519793
Number of successful extensions: 1007
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1008
Number of HSP's successfully gapped: 9
Length of query: 384
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 281
Effective length of database: 11,657,759
Effective search space: 3275830279
Effective search space used: 3275830279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)