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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0499400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.55 (0.031) R2 : 0.499
β1 : 1.92 (0.114) R2dD : 0.324 R2D : 0.23
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.08 (0.0733) R2dE : 0.272 R2E : 0.179
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.234 (0.0677) R2dN8 : 0.0226 R2N8 : -0.0329
σ : 0.577
deviance : 153.24
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 26.69
memory length : 359
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
141.75 0.559 4.67 1.26 1.17 0.388 -0.293 2.76 -0.142 4.66 29.97 1463 -- --
142.51 0.556 4.58 1.78 1.14 0.662 -0.412 -- -0.0671 4.76 29.5 1464 -- --
141.98 0.555 4.67 1.26 1.17 0.388 -- 2.78 -0.142 4.67 29.97 1462 -- --
141.69 0.554 4.56 1.84 1.16 0.69 -- -- 0.0781 4.67 29.2 1449 -- --
158.71 0.587 4.61 1.6 -- 1.08 -- 1.42 0.124 -- 26.6 359 -- --
166.14 0.604 4.58 1.61 1.12 -- -0.446 -- 0.00164 4.77 -- -- -- --
166.66 0.605 4.58 1.61 1.11 -- -- -- 0.00393 4.8 -- -- -- --
153.24 0.577 4.55 1.92 -- 1.08 -- -- 0.234 -- 26.69 359 -- --
226.69 0.701 4.6 -- 1.16 0.596 -- -- -0.0358 4.22 29 953 -- --
232.25 0.712 4.59 1.65 -- -- -- -- 0.0328 -- -- -- -- --
234.97 0.717 4.62 -- 1.14 -- -- -- -0.175 4.75 -- -- -- --
247.79 0.733 4.59 -- -- 0.88 -- -- 0.0122 -- 26.6 297 -- --
304.2 0.814 4.63 -- -- -- -- -- -0.15 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 133.62 humidity 60 90 > th dose dependent rect. 5 20
3 133.79 humidity 50 90 > th dose dependent rect. 5 12
5 133.96 humidity 60 30 > th dose dependent rect. 5 22
11 134.90 humidity 70 90 > th dose independent rect. 5 12
17 135.32 humidity 70 30 > th dose independent rect. 5 22
36 136.61 humidity 60 270 > th dose dependent rect. 2 22
46 137.26 humidity 60 1440 > th dose dependent rect. 11 1
97 139.03 humidity 70 1440 > th dose independent rect. 19 17
104 139.28 humidity 70 1440 > th dose independent rect. 10 2
106 139.29 humidity 70 1440 < th dose independent rect. 10 2
119 139.52 humidity 70 720 > th dose independent rect. 4 21
128 139.66 humidity 70 720 > th dose independent rect. 4 19
136 139.90 humidity 70 1440 > th dose independent rect. 5 7
138 139.92 radiation 10 1440 > th dose dependent rect. 8 2
139 139.94 humidity 70 1440 > th dose independent rect. 23 13
142 139.95 temperature 30 90 < th dose independent rect. 5 13
155 140.04 radiation 20 1440 > th dose independent rect. 16 18
158 140.05 radiation 10 720 > th dose independent rect. 16 20
160 140.07 humidity 80 270 < th dose independent rect. 7 13
163 140.09 humidity 70 1440 < th dose independent rect. 19 17
173 140.20 radiation 20 1440 > th dose dependent rect. 16 18
180 140.30 radiation 20 30 < th dose independent rect. 5 22
186 140.34 radiation 30 1440 > th dose independent rect. 8 2
193 140.38 temperature 30 1440 > th dose independent rect. 11 1
212 140.39 temperature 25 1440 > th dose dependent rect. 8 2
235 140.47 temperature 30 1440 < th dose independent rect. 11 1
243 140.58 radiation 40 30 < th dose dependent rect. 5 22
269 140.69 radiation 30 1440 < th dose independent rect. 15 19
272 140.71 temperature 25 720 > th dose dependent rect. 17 20
291 140.77 humidity 70 720 > th dose independent sin 9 NA
293 140.79 humidity 80 1440 < th dose dependent rect. 11 1
294 140.79 humidity 90 10 < th dose dependent rect. 7 14
295 140.80 temperature 30 1440 < th dose independent rect. 5 11
297 140.81 temperature 30 1440 < th dose independent rect. 7 9
313 140.85 temperature 30 1440 < th dose independent rect. 10 6
327 140.90 humidity 80 1440 < th dose dependent rect. 6 6
328 140.91 temperature 30 1440 < th dose independent rect. 11 4
330 140.91 radiation 30 1440 < th dose independent rect. 5 5
331 140.92 humidity 70 1440 < th dose independent rect. 6 6
370 140.97 humidity 80 720 < th dose dependent rect. 17 19
371 140.98 radiation 30 1440 < th dose independent rect. 17 17
376 140.99 humidity 60 10 > th dose dependent sin 21 NA
385 141.01 radiation 40 90 < th dose dependent rect. 5 12
389 141.02 radiation 30 1440 < th dose independent rect. 23 11
392 141.02 radiation 40 1440 < th dose dependent rect. 8 2
399 141.05 radiation 20 270 < th dose dependent rect. 19 23
402 141.06 radiation 40 90 < th dose dependent rect. 5 10
403 141.07 temperature 30 1440 > th dose independent rect. 8 8
440 141.12 temperature 30 1440 > th dose independent rect. 10 6
442 141.12 humidity 70 720 < th dose independent rect. 16 20
459 141.20 humidity 70 90 > th dose independent rect. 19 23
475 141.29 humidity 80 1440 < th dose dependent rect. 19 17
478 141.31 temperature 30 1440 < th dose independent sin 3 NA
510 141.34 humidity 70 30 > th dose independent rect. 5 7
627 141.56 humidity 70 720 > th dose independent rect. 4 13
649 141.62 temperature 30 1440 > th dose independent sin 3 NA
672 141.64 humidity 90 14400 < th dose dependent rect. 17 2
742 141.83 temperature 30 1440 < th dose independent rect. 13 23
757 141.85 radiation 30 1440 > th dose independent sin 11 NA
765 141.86 humidity 80 14400 > th dose independent rect. 17 1
826 141.87 temperature 30 1440 < th dose independent rect. 10 23
828 141.88 temperature 30 1440 < th dose independent no NA NA
856 141.88 temperature 30 1440 < th dose independent rect. 8 22
944 141.93 humidity 50 14400 > th dose dependent rect. 17 2
997 142.02 humidity 70 720 < th dose independent sin 9 NA