Os06g0155900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0155900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.62 | 0.284 | 8.26 | -1.95 | 0.497 | -0.854 | 0.018 | 0.539 | -0.681 | 21.6 | 30.19 | 123 | -- | -- |
| 36.94 | 0.283 | 8.25 | -1.87 | 0.495 | -0.871 | 0.0392 | -- | -0.67 | 21.7 | 29.89 | 130 | -- | -- |
| 36.61 | 0.282 | 8.26 | -1.96 | 0.491 | -0.852 | -- | 0.556 | -0.683 | 21.6 | 30.15 | 131 | -- | -- |
| 36.92 | 0.283 | 8.25 | -1.87 | 0.483 | -0.856 | -- | -- | -0.666 | 21.6 | 29.71 | 149 | -- | -- |
| 42.73 | 0.304 | 8.25 | -2.03 | -- | -1.13 | -- | 0.65 | -0.697 | -- | 60.39 | 577 | -- | -- |
| 46.51 | 0.32 | 8.22 | -1.66 | 0.544 | -- | -0.094 | -- | -0.495 | 19.6 | -- | -- | -- | -- |
| 46.54 | 0.319 | 8.22 | -1.65 | 0.543 | -- | -- | -- | -0.495 | 19.6 | -- | -- | -- | -- |
| 43.04 | 0.306 | 8.24 | -1.92 | -- | -1.12 | -- | -- | -0.668 | -- | 66.65 | 595 | -- | -- |
| 118.58 | 0.51 | 8.18 | -- | 0.555 | -0.0477 | -- | -- | -0.319 | 19.5 | 29.71 | 149 | -- | -- |
| 62.37 | 0.369 | 8.2 | -1.66 | -- | -- | -- | -- | -0.503 | -- | -- | -- | -- | -- |
| 118.62 | 0.509 | 8.17 | -- | 0.558 | -- | -- | -- | -0.311 | 19.4 | -- | -- | -- | -- |
| 131.95 | 0.535 | 8.17 | -- | -- | -0.443 | -- | -- | -0.371 | -- | 76.81 | 469 | -- | -- |
| 135.19 | 0.543 | 8.16 | -- | -- | -- | -- | -- | -0.319 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.99 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 2 | 34.00 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 4 | 34.15 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 5 | 34.19 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 11 | 34.28 | wind | 7.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 13 | 34.30 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 18 | 34.54 | wind | 7.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 22 | 34.71 | wind | 7.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 23 | 34.73 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 37 | 34.88 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 41 | 34.91 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 69 | 35.11 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 22 |
| 76 | 35.21 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 95 | 35.48 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 106 | 35.62 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 140 | 35.90 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 165 | 36.07 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 174 | 36.13 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 187 | 36.23 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 208 | 36.35 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 209 | 36.35 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 210 | 36.35 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 213 | 36.36 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 218 | 36.39 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 259 | 36.48 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 262 | 36.49 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 264 | 36.51 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 302 | 36.62 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 334 | 36.75 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 336 | 36.75 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 342 | 36.77 | wind | 9.0 | 43200 | > th | dose independent | sin | 12 | NA |
| 344 | 36.77 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 355 | 36.79 | wind | 9.0 | 43200 | > th | dose dependent | sin | 13 | NA |
| 356 | 36.79 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 367 | 36.81 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 21 |
| 383 | 36.85 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 386 | 36.86 | wind | 9.0 | 43200 | < th | dose independent | sin | 12 | NA |
| 398 | 36.88 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 418 | 36.92 | temperature | 10.0 | 90 | > th | dose dependent | no | NA | NA |
| 420 | 36.92 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 19 |
| 459 | 37.01 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 495 | 37.09 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 519 | 37.14 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 522 | 37.14 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 523 | 37.15 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 548 | 37.20 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 558 | 37.20 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 588 | 37.25 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 610 | 37.27 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 635 | 37.30 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 729 | 37.41 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 733 | 37.41 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 760 | 37.44 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 761 | 37.44 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 841 | 37.51 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 855 | 37.53 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 940 | 37.60 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 19 |