BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0155900 Os06g0155900|AK073997
(261 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0155900 Conserved hypothetical protein 544 e-155
Os02g0617050 187 6e-48
Os02g0616200 132 3e-31
Os06g0155400 Conserved hypothetical protein 117 1e-26
>Os06g0155900 Conserved hypothetical protein
Length = 261
Score = 544 bits (1402), Expect = e-155, Method: Compositional matrix adjust.
Identities = 261/261 (100%), Positives = 261/261 (100%)
Query: 1 MSGVGFSKIDGNSQQEEEEKEADDLDRDLGMMREELEREVLNTWLWGKDMDSILNEESEW 60
MSGVGFSKIDGNSQQEEEEKEADDLDRDLGMMREELEREVLNTWLWGKDMDSILNEESEW
Sbjct: 1 MSGVGFSKIDGNSQQEEEEKEADDLDRDLGMMREELEREVLNTWLWGKDMDSILNEESEW 60
Query: 61 QGTLPGWACPREDNYQSESEFSVDPDECDSFDGYWYEFRYEDGNPYYAAEREERWENQVM 120
QGTLPGWACPREDNYQSESEFSVDPDECDSFDGYWYEFRYEDGNPYYAAEREERWENQVM
Sbjct: 61 QGTLPGWACPREDNYQSESEFSVDPDECDSFDGYWYEFRYEDGNPYYAAEREERWENQVM 120
Query: 121 EQMKFTVSIAKQRQNDFFCPIFEGSLHVEGPCHLDPDILSTEHLLPQLPKWKNRWVNGYN 180
EQMKFTVSIAKQRQNDFFCPIFEGSLHVEGPCHLDPDILSTEHLLPQLPKWKNRWVNGYN
Sbjct: 121 EQMKFTVSIAKQRQNDFFCPIFEGSLHVEGPCHLDPDILSTEHLLPQLPKWKNRWVNGYN 180
Query: 181 HRNEPCRRAIQVYDLNVSSPHDEPMEIYGIFAFRDVRNNQQRNHVFQYSRDKPYKLRPVR 240
HRNEPCRRAIQVYDLNVSSPHDEPMEIYGIFAFRDVRNNQQRNHVFQYSRDKPYKLRPVR
Sbjct: 181 HRNEPCRRAIQVYDLNVSSPHDEPMEIYGIFAFRDVRNNQQRNHVFQYSRDKPYKLRPVR 240
Query: 241 DFMTKFVLFIPFVLKGSPPFL 261
DFMTKFVLFIPFVLKGSPPFL
Sbjct: 241 DFMTKFVLFIPFVLKGSPPFL 261
>Os02g0617050
Length = 448
Score = 187 bits (475), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 106/232 (45%), Positives = 143/232 (61%), Gaps = 23/232 (9%)
Query: 17 EEEKEADDLDRDLGMMREELEREVLNTWLWGKDMDSILNEESEWQGTLP---------GW 67
E ++ + D DL +R++L W ++D +L E E L
Sbjct: 14 ETPRKGVEFDMDLASLRDKL---------WDNELDLLLRESEEQDEELNLQDSDSDELSD 64
Query: 68 ACPREDNYQSESEFS-VDPDECDSFDGYWYEFRYEDGNPYYAAEREERWENQVMEQMKFT 126
C D Y+ +S+ D DE SF GY +EF YEDGNPYYAA+REE+WEN+++ +M+F
Sbjct: 65 ICGASDLYEYDSDVEYADADEGHSFFGYGHEFYYEDGNPYYAADREEKWENEILGKMEFP 124
Query: 127 VSIAKQRQNDFFCPIFEGSLHVEGPCHLDPDILSTEHLLPQLPKWKNRWVNGYNHRNEPC 186
V A + F ++EGSL VEG +DP+ +S EHL PQLPKW++RWVNG EPC
Sbjct: 125 VPKANATCD--FSFVWEGSLQVEGQFQVDPNRVSVEHLFPQLPKWESRWVNG--DGKEPC 180
Query: 187 RRAIQVYDLNVSSPHDEPMEIYGIFAFRDVRNNQQRNHVFQYSRDKPYKLRP 238
RAIQV+ L++SSP ++ MEIYG FAFRDVRN+Q RN +F+YSR+ P KL P
Sbjct: 181 CRAIQVFSLDLSSPSNDSMEIYGTFAFRDVRNSQLRNCIFEYSRENPCKLNP 232
>Os02g0616200
Length = 373
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 121/245 (49%), Gaps = 71/245 (28%)
Query: 24 DLDRDLGMMREELEREVLNTWLWGKDMDSILNEESEWQGTLP------------------ 65
+LD+DL REE ERE+LNTW+W K++D +L E E Q L
Sbjct: 6 ELDQDLAATREEAEREILNTWIWDKEID-LLQREIEEQDELSRLRHEQEREDDLYVCRMI 64
Query: 66 ----GWACPREDN--------YQSESEFSVDPDEC-------DSFDGYWYEFRYEDGNPY 106
G C ED+ + E+++ D + F Y FRYEDGNPY
Sbjct: 65 EERHGEPCHLEDHELEKIYGPHTYETDYDSDGSGVSFYSNGRNIFMKYGDGFRYEDGNPY 124
Query: 107 YAAEREERWENQVMEQMKFTVSIAKQRQNDFFCPIFEGSLHVEGPCHLDPDILSTEHL-- 164
YAA+REE WE Q++ QMKF + + +EGSL VEGP +LDP++ T+HL
Sbjct: 125 YAADREETWEKQILRQMKFPIPDLSES--------WEGSLVVEGPFNLDPNLTLTDHLSK 176
Query: 165 ---------------------LPQLPKWKNRWVNGYNHRNEPCRRAIQVYDLNVSSPHDE 203
+P LPKW+ RW++ EPCRRAIQV LN+SSP +
Sbjct: 177 STSPIRVLTIQMPSVVEIVFIMPALPKWERRWLD--RDGKEPCRRAIQVLGLNLSSPSNV 234
Query: 204 PMEIY 208
P+EIY
Sbjct: 235 PLEIY 239
>Os06g0155400 Conserved hypothetical protein
Length = 384
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 116/194 (59%), Gaps = 31/194 (15%)
Query: 49 DMDSILNEESEWQGTLPGWACPREDNYQSESEFSVDPDECDSFDGYWYEFRYEDGNPYYA 108
++DS + +ESEW+ G ED+Y E+E+ D DE D + F E+ + +A
Sbjct: 12 EVDSWVKKESEWEEAGDG----EEDDYSDETEYDDDDDESSDEDNDY--FSMENRDVRFA 65
Query: 109 AEREERWENQVMEQMKFTVSIAKQRQNDFFCPIFEGSLHVEGPCH-LDPDILSTEHLLPQ 167
+E E+WE+Q+MEQMKF+VS A I++GSLHV+GPC LDP++LS + +PQ
Sbjct: 66 SE--EKWESQIMEQMKFSVSTADPFD---IRTIWKGSLHVDGPCQSLDPNLLSMNNFMPQ 120
Query: 168 LPKWKNRWVNGYNHRNEPCRRAIQVYDLNVSSPHDEPMEIYGIFAFRDVRNNQQRNHVFQ 227
LP + + EPCRRAIQ EIYG+FAFRD+RN+Q+RN +F+
Sbjct: 121 LPLRMKK-----KNNEEPCRRAIQ--------------EIYGMFAFRDIRNSQERNFIFE 161
Query: 228 YSRDKPYKLRPVRD 241
Y RD+P+ L+P D
Sbjct: 162 YPRDRPFTLKPGSD 175
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.138 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,155,309
Number of extensions: 455170
Number of successful extensions: 1601
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1589
Number of HSP's successfully gapped: 4
Length of query: 261
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 162
Effective length of database: 11,866,615
Effective search space: 1922391630
Effective search space used: 1922391630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)