BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0112400 Os06g0112400|AK099246
(261 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0112400 RNA-binding region RNP-1 (RNA recognition moti... 529 e-150
Os04g0594400 RNA-binding region RNP-1 (RNA recognition moti... 323 1e-88
Os04g0624800 RNA-binding region RNP-1 (RNA recognition moti... 303 1e-82
Os03g0713600 RNA-binding region RNP-1 (RNA recognition moti... 278 4e-75
Os03g0748900 RNA-binding region RNP-1 (RNA recognition moti... 206 2e-53
Os04g0641400 RNA-binding region RNP-1 (RNA recognition moti... 136 1e-32
>Os06g0112400 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 261
Score = 529 bits (1362), Expect = e-150, Method: Compositional matrix adjust.
Identities = 261/261 (100%), Positives = 261/261 (100%)
Query: 1 MDVKPVRTVKVTNVSLSATVQDIKEFFSFSGDIEHVEMQSGDEWSQVAYVTFKDPQGAET 60
MDVKPVRTVKVTNVSLSATVQDIKEFFSFSGDIEHVEMQSGDEWSQVAYVTFKDPQGAET
Sbjct: 1 MDVKPVRTVKVTNVSLSATVQDIKEFFSFSGDIEHVEMQSGDEWSQVAYVTFKDPQGAET 60
Query: 61 ALLLSGATIVDLSVIIAPAPEYQPPPTSSAPPMYSATSVPVSEDNNVVHKAEDVVSTMLA 120
ALLLSGATIVDLSVIIAPAPEYQPPPTSSAPPMYSATSVPVSEDNNVVHKAEDVVSTMLA
Sbjct: 61 ALLLSGATIVDLSVIIAPAPEYQPPPTSSAPPMYSATSVPVSEDNNVVHKAEDVVSTMLA 120
Query: 121 KGFTLGKDAVGKAKAFDEKHGFTSTAGAKVASIDRKIGLSEKFTIGTSIVNEKVKEMDQK 180
KGFTLGKDAVGKAKAFDEKHGFTSTAGAKVASIDRKIGLSEKFTIGTSIVNEKVKEMDQK
Sbjct: 121 KGFTLGKDAVGKAKAFDEKHGFTSTAGAKVASIDRKIGLSEKFTIGTSIVNEKVKEMDQK 180
Query: 181 FQVSDKTKSAFAAAEQKVSTAGSAIMKNRYVFTGASWVTNAFNKVAKAATDVGTMTKEKM 240
FQVSDKTKSAFAAAEQKVSTAGSAIMKNRYVFTGASWVTNAFNKVAKAATDVGTMTKEKM
Sbjct: 181 FQVSDKTKSAFAAAEQKVSTAGSAIMKNRYVFTGASWVTNAFNKVAKAATDVGTMTKEKM 240
Query: 241 AAEDQHKGSGPSGGHSYTPIQ 261
AAEDQHKGSGPSGGHSYTPIQ
Sbjct: 241 AAEDQHKGSGPSGGHSYTPIQ 261
>Os04g0594400 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 314
Score = 323 bits (827), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 159/240 (66%), Positives = 194/240 (80%), Gaps = 6/240 (2%)
Query: 8 TVKVTNVSLSATVQDIKEFFSFSGDIEHVEMQSGDEWSQVAYVTFKDPQGAETALLLSGA 67
TVKV+NVSL A+++D+KEFFSFSGDI HVEMQS DE SQVAY+TFKD QG+ETA+LL+GA
Sbjct: 8 TVKVSNVSLKASLRDVKEFFSFSGDIVHVEMQSSDELSQVAYITFKDNQGSETAMLLTGA 67
Query: 68 TIVDLSVIIAPAPEYQPPPTSSAPPMYSATSVPVSEDNNVVHKAEDVVSTMLAKGFTLGK 127
TIVD++VI+ PA +Y+ P + A P + + KAED+V TMLAKGF LG+
Sbjct: 68 TIVDMAVIVTPATDYELPAS------VLAALEPKDSKPSALQKAEDIVGTMLAKGFILGR 121
Query: 128 DAVGKAKAFDEKHGFTSTAGAKVASIDRKIGLSEKFTIGTSIVNEKVKEMDQKFQVSDKT 187
DA+ +AKA DEKH TSTA A+V+S D+K+GLSEK ++GTS VN+KVKEMDQK+QVS+KT
Sbjct: 122 DALDRAKALDEKHQLTSTATARVSSFDKKMGLSEKISVGTSAVNDKVKEMDQKYQVSEKT 181
Query: 188 KSAFAAAEQKVSTAGSAIMKNRYVFTGASWVTNAFNKVAKAATDVGTMTKEKMAAEDQHK 247
+SA AAAEQ VSTAGSAIMKNRYV TGA+WVT AFNKVA AA DVGT KEK+A+E +HK
Sbjct: 182 RSALAAAEQSVSTAGSAIMKNRYVLTGAAWVTGAFNKVANAANDVGTKAKEKIASEQEHK 241
>Os04g0624800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 376
Score = 303 bits (775), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 158/257 (61%), Positives = 194/257 (75%), Gaps = 8/257 (3%)
Query: 6 VRTVKVTNVSLSATVQDIKEFFSFSGDIEHVEMQSGDEWSQVAYVTFKDPQGAETALLLS 65
V T+KV NVSL A+ QDI+EFFSFSG I HVEMQSGDE SQ AY+TF+D +GAE A+LL+
Sbjct: 2 VSTIKVHNVSLEASEQDIREFFSFSGVIVHVEMQSGDERSQFAYITFEDDEGAERAMLLT 61
Query: 66 GATIVDLSVIIAPAPEYQPPPTSSAPPMYSATSVPVSEDNNVVHKAEDVVSTMLAKGFTL 125
GATIVD+SVII PA YQ P A + S + + KAED V +MLAKGF L
Sbjct: 62 GATIVDMSVIITPATNYQLP----AAVLADIESKNAGGMESALRKAEDAVVSMLAKGFVL 117
Query: 126 GKDAVGKAKAFDEKHGFTSTAGAKVASIDRKIGLSEKFTIGTSIVNEKVKEMDQKFQVSD 185
GKDA+ +AK+FDEKH TSTA AKV S+DRK+GLS+KF+ GT +VNEK+KEMDQK+QV++
Sbjct: 118 GKDALERAKSFDEKHQLTSTATAKVTSLDRKMGLSQKFSTGTLVVNEKMKEMDQKYQVAE 177
Query: 186 KTKSAFAAAEQKVSTAGSAIMKNRYVFTGASWVTNAFNKVAKAATDVGTMTKEKMAAE-- 243
KTKSA AAAEQ VSTAGSAIM NRY+ TGA+WVT+A++KVA ATD G +KE + AE
Sbjct: 178 KTKSALAAAEQTVSTAGSAIMSNRYILTGAAWVTDAYSKVATTATDAGAKSKEMVVAEQD 237
Query: 244 DQHKGSGPSGGHSYTPI 260
D+H+ P+ Y+PI
Sbjct: 238 DKHQDDKPA--KDYSPI 252
>Os03g0713600 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 284
Score = 278 bits (710), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 146/244 (59%), Positives = 182/244 (74%), Gaps = 5/244 (2%)
Query: 6 VRTVKVTNVSLSATVQDIKEFFSFSGDIEHVEMQSGDEWSQVAYVTFKDPQGAETALLLS 65
VRTVKV+N+SL+A+ ++I EFFSFSGDIE+VEMQS E SQ+AYVTFKD QGA+TA+LLS
Sbjct: 3 VRTVKVSNISLNASKREITEFFSFSGDIEYVEMQSESERSQLAYVTFKDSQGADTAVLLS 62
Query: 66 GATIVDLSVIIAPAPEYQPPPTSSAPPMYSATSVPVSEDNNVVHKAEDVVSTMLAKGFTL 125
GATIVD SVII P YQ PP + +S S VV KAEDVVS+MLAKGF L
Sbjct: 63 GATIVDRSVIITPVVNYQLPPDARKQSAGEKSSSAES----VVRKAEDVVSSMLAKGFVL 118
Query: 126 GKDAVGKAKAFDEKHGFTSTAGAKVASIDRKIGLSEKFTIGTSIVNEKVKEMDQKFQVSD 185
KDA+ A++FDE+H S A A VAS+DR+ G+SEK ++G +IV KVKE+D ++QVS+
Sbjct: 119 SKDALNVARSFDERHNILSNATATVASLDRQYGVSEKISLGRAIVGSKVKEVDDRYQVSE 178
Query: 186 KTKSAFAAAEQKVSTAGSAIMKNRYVFTGASWVTNAFNKVAKAATDVGTMTKEKM-AAED 244
TKSA AAAEQK S A SAIM N+YV GASW+T+AF V KAA D+ +MTK+K+ AE+
Sbjct: 179 LTKSALAAAEQKASIASSAIMNNQYVSAGASWLTSAFGMVTKAAGDMSSMTKDKVDRAEE 238
Query: 245 QHKG 248
+ K
Sbjct: 239 ERKA 242
>Os03g0748900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 278
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/249 (46%), Positives = 157/249 (63%), Gaps = 22/249 (8%)
Query: 13 NVSLSATVQDIKEFFSFSGDIEHVEMQS-GDEWSQVAYVTFKDPQGAETALLLSGATIVD 71
N+S A ++++EFFSFSG+IEHV+++ G + AYVTFKDP+ E ALLLSGATIVD
Sbjct: 15 NISDLAGEREVREFFSFSGEIEHVDIRCDGVATGRTAYVTFKDPKALEIALLLSGATIVD 74
Query: 72 LSVIIAPAPEYQPPP---------------TSSAPPM-----YSATSVPVSEDNNVVHKA 111
V I PA +Y P TS+AP A + P + V KA
Sbjct: 75 RVVNITPAEDYIYIPVTDQQLVVSEVVGEVTSTAPNADLDQPTEANASPTT-GRVYVSKA 133
Query: 112 EDVVSTMLAKGFTLGKDAVGKAKAFDEKHGFTSTAGAKVASIDRKIGLSEKFTIGTSIVN 171
DV++T++A+G + +DAV KAKAFDEKH + A AK+ S D+++G+SEK G ++VN
Sbjct: 134 HDVMTTVIARGSAMRQDAVNKAKAFDEKHQLRANASAKINSFDKRVGISEKINSGITVVN 193
Query: 172 EKVKEMDQKFQVSDKTKSAFAAAEQKVSTAGSAIMKNRYVFTGASWVTNAFNKVAKAATD 231
EKVK +DQ+ VSDKT +A AAE+K++ GSA+ NRYV G SW+ AF+KVAKA
Sbjct: 194 EKVKSVDQRLHVSDKTMAALLAAERKLNDTGSAVKTNRYVSAGTSWLNGAFSKVAKAGHV 253
Query: 232 VGTMTKEKM 240
G+ T+EK
Sbjct: 254 AGSRTREKF 262
>Os04g0641400 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 251
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 132/230 (57%), Gaps = 13/230 (5%)
Query: 8 TVKVTNVSLSATVQDIKEFFSFSGDIEHVEMQSGDEWSQVAYVTFKDPQGAETALLLSGA 67
TV+VTN+S A+ D+ EFFSFSG IEH+E+ E+ AYVTFK+P ETA+LLSGA
Sbjct: 7 TVEVTNLSSRASESDLHEFFSFSGAIEHIELIRSGEYGSTAYVTFKEPYSLETAVLLSGA 66
Query: 68 TIVDLSVIIAPAPE-YQPPPTSSAPPMYSATSVPV---------SEDNNVVHKAEDVVST 117
TIVD V IA + +P P Y+ + S + A+DVV T
Sbjct: 67 TIVDQPVCIARWGQPNEPYNFWDTPNWYTEEEIEYRTYQTCQFNSTPQEALTIAQDVVKT 126
Query: 118 MLAKGFTLGKDAVGKAKAFDEKHGFTSTAGAKVASIDRKIGLSEKFTIGTSIVNEKV--- 174
MLA+G+ L KDA+ +A+AFDE H T+TA AK A + ++IGL+++ + T V+ V
Sbjct: 127 MLARGYVLSKDALARARAFDESHQVTATAAAKAAELSKRIGLTDRVSGLTDRVSAGVGAI 186
Query: 175 KEMDQKFQVSDKTKSAFAAAEQKVSTAGSAIMKNRYVFTGASWVTNAFNK 224
+ +D+ + VS+ TK+ A + + IM + Y GA +++A ++
Sbjct: 187 RSVDETYHVSETTKTVATATGRTAVKVVNGIMTSSYFSAGAMMLSDALHR 236
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.310 0.124 0.342
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,591,026
Number of extensions: 354248
Number of successful extensions: 2273
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 2262
Number of HSP's successfully gapped: 7
Length of query: 261
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 162
Effective length of database: 11,866,615
Effective search space: 1922391630
Effective search space used: 1922391630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 155 (64.3 bits)