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Os04g0594400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.79 (0.0293) R2 : 0.301
β1 : 1.43 (0.107) R2dD : 0.284 R2D : 0.21
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.418 (0.0625) R2dN8 : 0.0916 R2N8 : 0.0169
σ : 0.55
deviance : 138.34
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
108.22 0.489 8.88 0.811 0.415 -0.672 -0.14 1.43 0.185 2.52 19.2 2048 -- --
109.61 0.488 8.84 0.931 0.374 -1.03 -0.0484 -- 0.214 2.59 18.4 2281 -- --
108.29 0.485 8.88 0.812 0.413 -0.668 -- 1.43 0.186 2.53 19.18 2057 -- --
109.54 0.487 8.84 0.946 0.39 -1.1 -- -- 0.212 2.15 18.41 2663 -- --
116.58 0.503 8.88 0.848 -- -0.933 -- 0.952 0.177 -- 18.3 2376 -- --
127.21 0.529 8.79 1.41 0.431 -- -0.196 -- 0.406 2.3 -- -- -- --
127.36 0.528 8.79 1.42 0.43 -- -- -- 0.407 2.3 -- -- -- --
117.03 0.504 8.84 0.886 -- -1.19 -- -- 0.199 -- 18.5 2396 -- --
118.22 0.506 8.87 -- 0.406 -1.39 -- -- -0.00827 2.48 18.3 22198 -- --
138.34 0.55 8.79 1.43 -- -- -- -- 0.418 -- -- -- -- --
180.23 0.628 8.83 -- 0.457 -- -- -- 0.249 2.36 -- -- -- --
125.62 0.522 8.88 -- -- -1.42 -- -- 0.00119 -- 16.86 42622 -- --
192.62 0.648 8.83 -- -- -- -- -- 0.258 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 106.62 humidity 90.0 14400 > th dose dependent rect. 5 2
2 106.69 temperature 20.0 1440 > th dose independent rect. 6 1
4 107.05 temperature 20.0 1440 < th dose independent rect. 5 2
5 107.12 humidity 90.0 14400 > th dose independent rect. 5 2
7 107.38 humidity 90.0 14400 < th dose independent rect. 5 2
11 107.72 wind 1.0 14400 > th dose independent rect. 23 3
12 107.72 humidity 90.0 14400 > th dose dependent rect. 24 15
18 107.97 humidity 80.0 14400 > th dose dependent rect. 2 5
21 107.99 radiation 30.0 4320 < th dose independent rect. 16 16
34 108.15 wind 1.0 14400 < th dose dependent rect. 24 1
45 108.35 humidity 90.0 14400 > th dose independent rect. 23 2
46 108.36 humidity 90.0 14400 < th dose independent rect. 23 2
50 108.42 humidity 90.0 14400 < th dose independent rect. 23 8
52 108.44 humidity 90.0 14400 > th dose independent rect. 23 9
62 108.51 humidity 90.0 14400 > th dose dependent sin 5 NA
74 108.63 humidity 90.0 14400 < th dose independent rect. 3 4
114 109.13 wind 1.0 14400 < th dose independent rect. 23 3
119 109.19 wind 1.0 14400 < th dose independent rect. 24 1
122 109.20 radiation 30.0 4320 < th dose independent rect. 2 6
123 109.20 radiation 30.0 4320 < th dose independent rect. 21 11
125 109.21 radiation 30.0 4320 < th dose independent rect. 18 14
127 109.22 radiation 30.0 4320 < th dose independent rect. 6 2
137 109.24 radiation 30.0 4320 < th dose independent rect. 4 4
144 109.28 humidity 90.0 14400 > th dose dependent rect. 24 1
154 109.41 temperature 20.0 1440 < th dose dependent rect. 3 1
156 109.43 radiation 10.0 4320 < th dose dependent rect. 24 5
164 109.49 temperature 20.0 4320 > th dose independent rect. 18 4
178 109.60 wind 1.0 43200 > th dose independent rect. 2 1
181 109.61 temperature 20.0 1440 < th dose independent rect. 22 1
182 109.61 wind 1.0 14400 < th dose independent rect. 21 5
183 109.61 temperature 20.0 1440 < th dose dependent rect. 2 3
196 109.71 wind 1.0 43200 < th dose independent rect. 2 1
198 109.72 wind 1.0 14400 < th dose dependent rect. 19 7
205 109.78 wind 9.0 14400 < th dose independent rect. 16 4
209 109.81 temperature 20.0 1440 < th dose independent rect. 21 3
216 109.84 wind 1.0 14400 < th dose dependent rect. 21 5
228 109.91 temperature 20.0 4320 < th dose independent rect. 19 3
232 109.93 humidity 60.0 43200 < th dose dependent rect. 8 1
237 109.95 wind 9.0 14400 > th dose independent rect. 16 4
253 110.03 radiation 10.0 4320 < th dose dependent rect. 22 7
266 110.10 humidity 90.0 14400 > th dose independent sin 7 NA
277 110.16 radiation 20.0 4320 > th dose dependent rect. 6 2
300 110.19 wind 1.0 14400 < th dose independent rect. 19 7
309 110.24 temperature 20.0 1440 < th dose independent rect. 21 13
323 110.31 radiation 1.0 4320 > th dose independent rect. 18 11
326 110.32 humidity 70.0 43200 > th dose independent rect. 10 2
329 110.33 humidity 50.0 43200 > th dose independent rect. 8 1
346 110.37 humidity 50.0 43200 < th dose independent rect. 8 1
355 110.40 temperature 20.0 1440 > th dose independent rect. 21 13
413 110.50 radiation 10.0 43200 < th dose dependent rect. 18 11
422 110.52 temperature 20.0 1440 < th dose independent sin 9 NA
439 110.54 humidity 90.0 14400 > th dose dependent rect. 11 20
441 110.55 radiation 30.0 14400 > th dose independent rect. 7 1
476 110.59 wind 7.0 43200 > th dose independent rect. 17 2
481 110.60 humidity 70.0 43200 < th dose independent rect. 11 1
489 110.62 atmosphere 1015.0 43200 < th dose independent rect. 13 7
495 110.62 wind 1.0 43200 < th dose dependent rect. 2 1
519 110.66 humidity 90.0 14400 > th dose independent rect. 22 6
521 110.66 humidity 70.0 43200 > th dose independent rect. 2 11
551 110.69 temperature 20.0 1440 > th dose independent sin 9 NA
554 110.69 wind 7.0 14400 > th dose dependent rect. 17 3
558 110.70 humidity 70.0 43200 > th dose independent rect. 3 9
576 110.72 atmosphere 1015.0 43200 > th dose independent rect. 12 8
629 110.78 atmosphere 1015.0 43200 < th dose independent rect. 14 1
630 110.78 wind 3.0 43200 < th dose independent rect. 13 2
631 110.78 atmosphere 1015.0 43200 < th dose independent rect. 18 2
633 110.78 atmosphere 1015.0 43200 < th dose independent rect. 13 3
640 110.79 wind 5.0 43200 < th dose independent rect. 22 2
641 110.79 atmosphere 1015.0 43200 > th dose independent rect. 13 2
660 110.80 radiation 30.0 43200 < th dose dependent rect. 18 8
674 110.81 radiation 10.0 4320 < th dose independent rect. 17 13
676 110.81 wind 7.0 43200 > th dose independent rect. 16 16
705 110.83 wind 7.0 43200 < th dose independent rect. 16 16
706 110.83 precipitation 0.1 43200 > th dose dependent rect. 16 3
728 110.85 wind 3.0 43200 > th dose independent rect. 13 2
767 110.88 humidity 90.0 14400 > th dose dependent no NA NA
777 110.89 humidity 70.0 43200 < th dose independent rect. 24 13
783 110.89 wind 7.0 43200 > th dose dependent rect. 16 16
795 110.91 wind 3.0 43200 < th dose dependent rect. 10 1
819 110.94 atmosphere 1015.0 43200 > th dose dependent rect. 13 1
824 110.95 humidity 90.0 14400 < th dose independent sin 7 NA
840 110.96 radiation 10.0 43200 < th dose dependent rect. 18 2
895 111.01 humidity 60.0 43200 < th dose dependent rect. 21 12
915 111.03 atmosphere 1015.0 43200 > th dose independent rect. 16 5
963 111.08 radiation 1.0 4320 > th dose independent rect. 18 1
983 111.09 wind 1.0 43200 > th dose independent rect. 9 2