BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0594400 Os04g0594400|AK067019
(314 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0594400 RNA-binding region RNP-1 (RNA recognition moti... 582 e-166
Os04g0624800 RNA-binding region RNP-1 (RNA recognition moti... 343 1e-94
Os06g0112400 RNA-binding region RNP-1 (RNA recognition moti... 323 1e-88
Os03g0713600 RNA-binding region RNP-1 (RNA recognition moti... 269 2e-72
Os03g0748900 RNA-binding region RNP-1 (RNA recognition moti... 195 4e-50
Os04g0641400 RNA-binding region RNP-1 (RNA recognition moti... 137 1e-32
AK108412 74 2e-13
>Os04g0594400 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 314
Score = 582 bits (1501), Expect = e-166, Method: Compositional matrix adjust.
Identities = 293/314 (93%), Positives = 293/314 (93%)
Query: 1 MAASTFSTVKVSNVSLKASLRDVKEFFSFSGDIVHVEMQSSDELSQVAYITFKDNQGSET 60
MAASTFSTVKVSNVSLKASLRDVKEFFSFSGDIVHVEMQSSDELSQVAYITFKDNQGSET
Sbjct: 1 MAASTFSTVKVSNVSLKASLRDVKEFFSFSGDIVHVEMQSSDELSQVAYITFKDNQGSET 60
Query: 61 AMLLTGATIVDMAVIVTPATDYELPASVLAALEPKDSKPSALQKAEDIVGTMLAKGFILG 120
AMLLTGATIVDMAVIVTPATDYELPASVLAALEPKDSKPSALQKAEDIVGTMLAKGFILG
Sbjct: 61 AMLLTGATIVDMAVIVTPATDYELPASVLAALEPKDSKPSALQKAEDIVGTMLAKGFILG 120
Query: 121 RDALDRAKALDEKHQLTSTATARVSSFDKKMGLSEKISVGTSAVNDKVKEMDQKYQVSEK 180
RDALDRAKALDEKHQLTSTATARVSSFDKKMGLSEKISVGTSAVNDKVKEMDQKYQVSEK
Sbjct: 121 RDALDRAKALDEKHQLTSTATARVSSFDKKMGLSEKISVGTSAVNDKVKEMDQKYQVSEK 180
Query: 181 TRSALAAAEQSVSTAGSAIMKNRYVLTGAAWVTGAFNKVANAANDVGTKAKEKIASEQEH 240
TRSALAAAEQSVSTAGSAIMKNRYVLTGAAWVTGAFNKVANAANDVGTKAKEKIASEQEH
Sbjct: 181 TRSALAAAEQSVSTAGSAIMKNRYVLTGAAWVTGAFNKVANAANDVGTKAKEKIASEQEH 240
Query: 241 KTVELESAEPNSSEGHGTQKDVDGEFAKIQVSESPEDIPISTTATVPITXXXXXXXXXXX 300
KTVELESAEPNSSEGHGTQKDVDGEFAKIQVSESPEDIPISTTATVPIT
Sbjct: 241 KTVELESAEPNSSEGHGTQKDVDGEFAKIQVSESPEDIPISTTATVPITDEDSSQASPPA 300
Query: 301 XXXXXXXXXXGLIL 314
GLIL
Sbjct: 301 ASPKKPEPAQGLIL 314
>Os04g0624800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 376
Score = 343 bits (879), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 178/276 (64%), Positives = 224/276 (81%), Gaps = 6/276 (2%)
Query: 7 STVKVSNVSLKASLRDVKEFFSFSGDIVHVEMQSSDELSQVAYITFKDNQGSETAMLLTG 66
ST+KV NVSL+AS +D++EFFSFSG IVHVEMQS DE SQ AYITF+D++G+E AMLLTG
Sbjct: 3 STIKVHNVSLEASEQDIREFFSFSGVIVHVEMQSGDERSQFAYITFEDDEGAERAMLLTG 62
Query: 67 ATIVDMAVIVTPATDYELPASVLAALEPKDS--KPSALQKAEDIVGTMLAKGFILGRDAL 124
ATIVDM+VI+TPAT+Y+LPA+VLA +E K++ SAL+KAED V +MLAKGF+LG+DAL
Sbjct: 63 ATIVDMSVIITPATNYQLPAAVLADIESKNAGGMESALRKAEDAVVSMLAKGFVLGKDAL 122
Query: 125 DRAKALDEKHQLTSTATARVSSFDKKMGLSEKISVGTSAVNDKVKEMDQKYQVSEKTRSA 184
+RAK+ DEKHQLTSTATA+V+S D+KMGLS+K S GT VN+K+KEMDQKYQV+EKT+SA
Sbjct: 123 ERAKSFDEKHQLTSTATAKVTSLDRKMGLSQKFSTGTLVVNEKMKEMDQKYQVAEKTKSA 182
Query: 185 LAAAEQSVSTAGSAIMKNRYVLTGAAWVTGAFNKVANAANDVGTKAKEKIASEQEHKTVE 244
LAAAEQ+VSTAGSAIM NRY+LTGAAWVT A++KVA A D G K+KE + +EQ+ K +
Sbjct: 183 LAAAEQTVSTAGSAIMSNRYILTGAAWVTDAYSKVATTATDAGAKSKEMVVAEQDDKHQD 242
Query: 245 LESAE---PNSSEGHGTQ-KDVDGEFAKIQVSESPE 276
+ A+ P SS+ + K +GE K + E PE
Sbjct: 243 DKPAKDYSPISSKEFVQEGKHQEGERPKKNMPEKPE 278
>Os06g0112400 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 261
Score = 323 bits (828), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 159/240 (66%), Positives = 194/240 (80%), Gaps = 6/240 (2%)
Query: 8 TVKVSNVSLKASLRDVKEFFSFSGDIVHVEMQSSDELSQVAYITFKDNQGSETAMLLTGA 67
TVKV+NVSL A+++D+KEFFSFSGDI HVEMQS DE SQVAY+TFKD QG+ETA+LL+GA
Sbjct: 8 TVKVTNVSLSATVQDIKEFFSFSGDIEHVEMQSGDEWSQVAYVTFKDPQGAETALLLSGA 67
Query: 68 TIVDMAVIVTPATDYELPAS------VLAALEPKDSKPSALQKAEDIVGTMLAKGFILGR 121
TIVD++VI+ PA +Y+ P + A P + + KAED+V TMLAKGF LG+
Sbjct: 68 TIVDLSVIIAPAPEYQPPPTSSAPPMYSATSVPVSEDNNVVHKAEDVVSTMLAKGFTLGK 127
Query: 122 DALDRAKALDEKHQLTSTATARVSSFDKKMGLSEKISVGTSAVNDKVKEMDQKYQVSEKT 181
DA+ +AKA DEKH TSTA A+V+S D+K+GLSEK ++GTS VN+KVKEMDQK+QVS+KT
Sbjct: 128 DAVGKAKAFDEKHGFTSTAGAKVASIDRKIGLSEKFTIGTSIVNEKVKEMDQKFQVSDKT 187
Query: 182 RSALAAAEQSVSTAGSAIMKNRYVLTGAAWVTGAFNKVANAANDVGTKAKEKIASEQEHK 241
+SA AAAEQ VSTAGSAIMKNRYV TGA+WVT AFNKVA AA DVGT KEK+A+E +HK
Sbjct: 188 KSAFAAAEQKVSTAGSAIMKNRYVFTGASWVTNAFNKVAKAATDVGTMTKEKMAAEDQHK 247
>Os03g0713600 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 284
Score = 269 bits (688), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 145/282 (51%), Positives = 197/282 (69%), Gaps = 18/282 (6%)
Query: 8 TVKVSNVSLKASLRDVKEFFSFSGDIVHVEMQSSDELSQVAYITFKDNQGSETAMLLTGA 67
TVKVSN+SL AS R++ EFFSFSGDI +VEMQS E SQ+AY+TFKD+QG++TA+LL+GA
Sbjct: 5 TVKVSNISLNASKREITEFFSFSGDIEYVEMQSESERSQLAYVTFKDSQGADTAVLLSGA 64
Query: 68 TIVDMAVIVTPATDYELP--ASVLAALEPKDSKPSALQKAEDIVGTMLAKGFILGRDALD 125
TIVD +VI+TP +Y+LP A +A E S S ++KAED+V +MLAKGF+L +DAL+
Sbjct: 65 TIVDRSVIITPVVNYQLPPDARKQSAGEKSSSAESVVRKAEDVVSSMLAKGFVLSKDALN 124
Query: 126 RAKALDEKHQLTSTATARVSSFDKKMGLSEKISVGTSAVNDKVKEMDQKYQVSEKTRSAL 185
A++ DE+H + S ATA V+S D++ G+SEKIS+G + V KVKE+D +YQVSE T+SAL
Sbjct: 125 VARSFDERHNILSNATATVASLDRQYGVSEKISLGRAIVGSKVKEVDDRYQVSELTKSAL 184
Query: 186 AAAEQSVSTAGSAIMKNRYVLTGAAWVTGAFNKVANAANDVGTKAKEKI-ASEQEHKTVE 244
AAAEQ S A SAIM N+YV GA+W+T AF V AA D+ + K+K+ +E+E K +
Sbjct: 185 AAAEQKASIASSAIMNNQYVSAGASWLTSAFGMVTKAAGDMSSMTKDKVDRAEEERKAIM 244
Query: 245 LESAEPNSSEGHGTQKDVDGEFAKIQVSE----SPEDIPIST 282
E E +G D +AKI + E P +P+ +
Sbjct: 245 WE-------ERNGLVSD----YAKIHLDEPSSWEPAVLPLES 275
>Os03g0748900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 278
Score = 195 bits (495), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 106/248 (42%), Positives = 163/248 (65%), Gaps = 26/248 (10%)
Query: 13 NVSLKASLRDVKEFFSFSGDIVHVEMQSSD-ELSQVAYITFKDNQGSETAMLLTGATIVD 71
N+S A R+V+EFFSFSG+I HV+++ + AY+TFKD + E A+LL+GATIVD
Sbjct: 15 NISDLAGEREVREFFSFSGEIEHVDIRCDGVATGRTAYVTFKDPKALEIALLLSGATIVD 74
Query: 72 MAVIVTPATDY-ELPAS----VLAAL--EPKDSKPSA------------------LQKAE 106
V +TPA DY +P + V++ + E + P+A + KA
Sbjct: 75 RVVNITPAEDYIYIPVTDQQLVVSEVVGEVTSTAPNADLDQPTEANASPTTGRVYVSKAH 134
Query: 107 DIVGTMLAKGFILGRDALDRAKALDEKHQLTSTATARVSSFDKKMGLSEKISVGTSAVND 166
D++ T++A+G + +DA+++AKA DEKHQL + A+A+++SFDK++G+SEKI+ G + VN+
Sbjct: 135 DVMTTVIARGSAMRQDAVNKAKAFDEKHQLRANASAKINSFDKRVGISEKINSGITVVNE 194
Query: 167 KVKEMDQKYQVSEKTRSALAAAEQSVSTAGSAIMKNRYVLTGAAWVTGAFNKVANAANDV 226
KVK +DQ+ VS+KT +AL AAE+ ++ GSA+ NRYV G +W+ GAF+KVA A +
Sbjct: 195 KVKSVDQRLHVSDKTMAALLAAERKLNDTGSAVKTNRYVSAGTSWLNGAFSKVAKAGHVA 254
Query: 227 GTKAKEKI 234
G++ +EK
Sbjct: 255 GSRTREKF 262
>Os04g0641400 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 251
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 133/230 (57%), Gaps = 19/230 (8%)
Query: 8 TVKVSNVSLKASLRDVKEFFSFSGDIVHVEMQSSDELSQVAYITFKDNQGSETAMLLTGA 67
TV+V+N+S +AS D+ EFFSFSG I H+E+ S E AY+TFK+ ETA+LL+GA
Sbjct: 7 TVEVTNLSSRASESDLHEFFSFSGAIEHIELIRSGEYGSTAYVTFKEPYSLETAVLLSGA 66
Query: 68 TIVDMAVIV--------------TP--ATDYELPASVLAALEPKDSKPSALQKAEDIVGT 111
TIVD V + TP T+ E+ + + AL A+D+V T
Sbjct: 67 TIVDQPVCIARWGQPNEPYNFWDTPNWYTEEEIEYRTYQTCQFNSTPQEALTIAQDVVKT 126
Query: 112 MLAKGFILGRDALDRAKALDEKHQLTSTATARVSSFDKKMGLSEKISVGTSAVN---DKV 168
MLA+G++L +DAL RA+A DE HQ+T+TA A+ + K++GL++++S T V+ +
Sbjct: 127 MLARGYVLSKDALARARAFDESHQVTATAAAKAAELSKRIGLTDRVSGLTDRVSAGVGAI 186
Query: 169 KEMDQKYQVSEKTRSALAAAEQSVSTAGSAIMKNRYVLTGAAWVTGAFNK 218
+ +D+ Y VSE T++ A ++ + IM + Y GA ++ A ++
Sbjct: 187 RSVDETYHVSETTKTVATATGRTAVKVVNGIMTSSYFSAGAMMLSDALHR 236
>AK108412
Length = 267
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 108/217 (49%), Gaps = 24/217 (11%)
Query: 4 STFSTVKVSNVSLKASLRDVKEFFSFSGDIVHVEM---QSSDELSQVAYITFKDNQGSET 60
S +TV VS ++ S ++V++FFSF G IV++ + S + A +TF+ + ++T
Sbjct: 2 SDHTTVHVSGIASSTSDKEVQDFFSFCGKIVNISVTPTSSEANAPKSASVTFEKDAAAKT 61
Query: 61 AMLLTGATIVDMAVIVTPATDYELPASV--LAALEPKDSKPSALQKAED----IVGTMLA 114
A+LL + V V A E A +A + KD + +++ + I+ LA
Sbjct: 62 ALLLDQTQLGPSVVTVKAAQSLEDIAGEQGTSAAQAKDENHNDIEQEDKPRSRILAEYLA 121
Query: 115 KGFILGRDALDRAKALDEKHQLTSTATARVSSFDKKMGLSEKISVGTSAVNDKVKEMDQK 174
G+ + AL RA ALD+KH +S T+ +S+FDKK G D+ + +D+
Sbjct: 122 HGYAISDQALQRAIALDQKHGFSSRFTSVLSNFDKKTG-----------ATDRARGLDES 170
Query: 175 YQVSEKT----RSALAAAEQSVSTAGSAIMKNRYVLT 207
Y++S+K R + E+++ T +++ Y T
Sbjct: 171 YKLSDKAASGWRGLHSYFEKALGTPSGQKLRDFYSQT 207
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.308 0.122 0.317
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,822,860
Number of extensions: 279476
Number of successful extensions: 938
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 928
Number of HSP's successfully gapped: 7
Length of query: 314
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 213
Effective length of database: 11,762,187
Effective search space: 2505345831
Effective search space used: 2505345831
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 156 (64.7 bits)