Os03g0748900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os03g0748900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.57 | 0.341 | 11.2 | -1.18 | 1.01 | 1.52 | 0.0563 | 4.17 | -0.0195 | 1.86 | 1.14 | 1444 | -- | -- |
| 57.84 | 0.354 | 11.1 | -0.791 | 0.918 | 0.843 | 0.0834 | -- | 0.095 | 1.97 | 4.202 | 1475 | -- | -- |
| 52.58 | 0.338 | 11.2 | -1.18 | 0.999 | 1.51 | -- | 4.14 | -0.0201 | 1.88 | 1.165 | 1446 | -- | -- |
| 57.84 | 0.354 | 11.1 | -0.776 | 0.911 | 0.88 | -- | -- | 0.0975 | 2.02 | 4.1 | 1482 | -- | -- |
| 59.96 | 0.361 | 11.1 | -0.837 | -- | 1.79 | -- | 1.13 | 0.0997 | -- | 3.607 | 1752 | -- | -- |
| 68.54 | 0.388 | 11.1 | -0.902 | 0.992 | -- | 0.00603 | -- | -0.0459 | 1.79 | -- | -- | -- | -- |
| 68.54 | 0.388 | 11.1 | -0.902 | 0.992 | -- | -- | -- | -0.0459 | 1.79 | -- | -- | -- | -- |
| 61.27 | 0.365 | 11.1 | -0.705 | -- | 1.78 | -- | -- | 0.145 | -- | 3.799 | 1760 | -- | -- |
| 59.31 | 0.359 | 11.1 | -- | 0.96 | 1.2 | -- | -- | 0.44 | 1.15 | 2.691 | 22277 | -- | -- |
| 128.3 | 0.529 | 11.1 | -0.862 | -- | -- | -- | -- | -0.0234 | -- | -- | -- | -- | -- |
| 90 | 0.444 | 11.1 | -- | 0.976 | -- | -- | -- | 0.0546 | 1.76 | -- | -- | -- | -- |
| 73.69 | 0.4 | 11.1 | -- | -- | 1.92 | -- | -- | 0.236 | -- | 3.115 | 1730 | -- | -- |
| 147.89 | 0.568 | 11.1 | -- | -- | -- | -- | -- | 0.0722 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.47 | temperature | 25 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 3 | 45.69 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 4 | 45.78 | temperature | 10 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 5 | 45.78 | temperature | 30 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 18 | 45.87 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 110 | 46.21 | temperature | 10 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 169 | 46.29 | temperature | 25 | 14400 | > th | dose dependent | sin | 4 | NA |
| 238 | 46.37 | temperature | 25 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 297 | 46.45 | temperature | 10 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 328 | 46.48 | temperature | 30 | 14400 | < th | dose dependent | rect. | 5 | 10 |
| 346 | 46.51 | temperature | 10 | 14400 | > th | dose dependent | sin | 2 | NA |
| 508 | 46.66 | temperature | 30 | 14400 | < th | dose dependent | sin | 2 | NA |
| 865 | 46.88 | temperature | 20 | 14400 | > th | dose dependent | no | NA | NA |
| 928 | 46.90 | temperature | 20 | 14400 | > th | dose dependent | rect. | 12 | 23 |