BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0748900 Os03g0748900|AK061165
(278 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0748900 RNA-binding region RNP-1 (RNA recognition moti... 517 e-147
Os06g0112400 RNA-binding region RNP-1 (RNA recognition moti... 213 1e-55
Os04g0594400 RNA-binding region RNP-1 (RNA recognition moti... 200 1e-51
Os03g0713600 RNA-binding region RNP-1 (RNA recognition moti... 189 1e-48
Os04g0624800 RNA-binding region RNP-1 (RNA recognition moti... 186 2e-47
Os04g0641400 RNA-binding region RNP-1 (RNA recognition moti... 127 8e-30
>Os03g0748900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 278
Score = 517 bits (1331), Expect = e-147, Method: Compositional matrix adjust.
Identities = 266/278 (95%), Positives = 266/278 (95%)
Query: 1 MEGERRAVRTVRVRNISDLAGEREVREFFSFSGEIEHVDIRCDGVATGRTAYVTFKDPKA 60
MEGERRAVRTVRVRNISDLAGEREVREFFSFSGEIEHVDIRCDGVATGRTAYVTFKDPKA
Sbjct: 1 MEGERRAVRTVRVRNISDLAGEREVREFFSFSGEIEHVDIRCDGVATGRTAYVTFKDPKA 60
Query: 61 LEIALLLSGATIVDRVVNITPAEDYIYIPVTDQQLXXXXXXXXXXXXAPNADLDQPTEAN 120
LEIALLLSGATIVDRVVNITPAEDYIYIPVTDQQL APNADLDQPTEAN
Sbjct: 61 LEIALLLSGATIVDRVVNITPAEDYIYIPVTDQQLVVSEVVGEVTSTAPNADLDQPTEAN 120
Query: 121 ASPTTGRVYVSKAHDVMTTVIARGSAMRQDAVNKAKAFDEKHQLRANASAKINSFDKRVG 180
ASPTTGRVYVSKAHDVMTTVIARGSAMRQDAVNKAKAFDEKHQLRANASAKINSFDKRVG
Sbjct: 121 ASPTTGRVYVSKAHDVMTTVIARGSAMRQDAVNKAKAFDEKHQLRANASAKINSFDKRVG 180
Query: 181 ISEKINSGITVVNEKVKSVDQRLHVSDKTMAALLAAERKLNDTGSAVKTNRYVSAGTSWL 240
ISEKINSGITVVNEKVKSVDQRLHVSDKTMAALLAAERKLNDTGSAVKTNRYVSAGTSWL
Sbjct: 181 ISEKINSGITVVNEKVKSVDQRLHVSDKTMAALLAAERKLNDTGSAVKTNRYVSAGTSWL 240
Query: 241 NGAFSKVAKAGHVAGSRTREKFQIAVSNLTAKGPAVVA 278
NGAFSKVAKAGHVAGSRTREKFQIAVSNLTAKGPAVVA
Sbjct: 241 NGAFSKVAKAGHVAGSRTREKFQIAVSNLTAKGPAVVA 278
>Os06g0112400 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 261
Score = 213 bits (542), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/257 (46%), Positives = 162/257 (63%), Gaps = 20/257 (7%)
Query: 6 RAVRTVRVRNISDLAGEREVREFFSFSGEIEHVDIRCDGVATGRTAYVTFKDPKALEIAL 65
+ VRTV+V N+S A ++++EFFSFSG+IEHV+++ G + AYVTFKDP+ E AL
Sbjct: 4 KPVRTVKVTNVSLSATVQDIKEFFSFSGDIEHVEMQS-GDEWSQVAYVTFKDPQGAETAL 62
Query: 66 LLSGATIVDRVVNITPAEDYIYIPVTDQQLXXXXXXXXXXXXAPNADLDQPTEANASPTT 125
LLSGATIVD V I PA +Y P + AP + T S
Sbjct: 63 LLSGATIVDLSVIIAPAPEYQPPPTS---------------SAP--PMYSATSVPVSEDN 105
Query: 126 GRVYVSKAHDVMTTVIARGSAMRQDAVNKAKAFDEKHQLRANASAKINSFDKRVGISEKI 185
V+ KA DV++T++A+G + +DAV KAKAFDEKH + A AK+ S D+++G+SEK
Sbjct: 106 NVVH--KAEDVVSTMLAKGFTLGKDAVGKAKAFDEKHGFTSTAGAKVASIDRKIGLSEKF 163
Query: 186 NSGITVVNEKVKSVDQRLHVSDKTMAALLAAERKLNDTGSAVKTNRYVSAGTSWLNGAFS 245
G ++VNEKVK +DQ+ VSDKT +A AAE+K++ GSA+ NRYV G SW+ AF+
Sbjct: 164 TIGTSIVNEKVKEMDQKFQVSDKTKSAFAAAEQKVSTAGSAIMKNRYVFTGASWVTNAFN 223
Query: 246 KVAKAGHVAGSRTREKF 262
KVAKA G+ T+EK
Sbjct: 224 KVAKAATDVGTMTKEKM 240
>Os04g0594400 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 314
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/253 (42%), Positives = 162/253 (64%), Gaps = 26/253 (10%)
Query: 10 TVRVRNISDLAGEREVREFFSFSGEIEHVDIRCDGVATGRTAYVTFKDPKALEIALLLSG 69
TV+V N+S A R+V+EFFSFSG+I HV+++ + AY+TFKD + E A+LL+G
Sbjct: 8 TVKVSNVSLKASLRDVKEFFSFSGDIVHVEMQSSD-ELSQVAYITFKDNQGSETAMLLTG 66
Query: 70 ATIVDRVVNITPAEDYIYIPVTDQQLXXXXXXXXXXXXAPNADLDQPTEANASPTTGRVY 129
ATIVD V +TPA DY P + L ++ P+
Sbjct: 67 ATIVDMAVIVTPATDY---------------------ELPASVLAALEPKDSKPSA---- 101
Query: 130 VSKAHDVMTTVIARGSAMRQDAVNKAKAFDEKHQLRANASAKINSFDKRVGISEKINSGI 189
+ KA D++ T++A+G + +DA+++AKA DEKHQL + A+A+++SFDK++G+SEKI+ G
Sbjct: 102 LQKAEDIVGTMLAKGFILGRDALDRAKALDEKHQLTSTATARVSSFDKKMGLSEKISVGT 161
Query: 190 TVVNEKVKSVDQRLHVSDKTMAALLAAERKLNDTGSAVKTNRYVSAGTSWLNGAFSKVAK 249
+ VN+KVK +DQ+ VS+KT +AL AAE+ ++ GSA+ NRYV G +W+ GAF+KVA
Sbjct: 162 SAVNDKVKEMDQKYQVSEKTRSALAAAEQSVSTAGSAIMKNRYVLTGAAWVTGAFNKVAN 221
Query: 250 AGHVAGSRTREKF 262
A + G++ +EK
Sbjct: 222 AANDVGTKAKEKI 234
>Os03g0713600 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 284
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 154/254 (60%), Gaps = 24/254 (9%)
Query: 8 VRTVRVRNISDLAGEREVREFFSFSGEIEHVDIRCDGVATGRTAYVTFKDPKALEIALLL 67
VRTV+V NIS A +RE+ EFFSFSG+IE+V+++ + + AYVTFKD + + A+LL
Sbjct: 3 VRTVKVSNISLNASKREITEFFSFSGDIEYVEMQSES-ERSQLAYVTFKDSQGADTAVLL 61
Query: 68 SGATIVDRVVNITPAEDYIYIPVTDQQLXXXXXXXXXXXXAPNADLDQPTEANASPTTGR 127
SGATIVDR V ITP +Y P +Q A ++
Sbjct: 62 SGATIVDRSVIITPVVNYQLPPDARKQ-----------------------SAGEKSSSAE 98
Query: 128 VYVSKAHDVMTTVIARGSAMRQDAVNKAKAFDEKHQLRANASAKINSFDKRVGISEKINS 187
V KA DV+++++A+G + +DA+N A++FDE+H + +NA+A + S D++ G+SEKI+
Sbjct: 99 SVVRKAEDVVSSMLAKGFVLSKDALNVARSFDERHNILSNATATVASLDRQYGVSEKISL 158
Query: 188 GITVVNEKVKSVDQRLHVSDKTMAALLAAERKLNDTGSAVKTNRYVSAGTSWLNGAFSKV 247
G +V KVK VD R VS+ T +AL AAE+K + SA+ N+YVSAG SWL AF V
Sbjct: 159 GRAIVGSKVKEVDDRYQVSELTKSALAAAEQKASIASSAIMNNQYVSAGASWLTSAFGMV 218
Query: 248 AKAGHVAGSRTREK 261
KA S T++K
Sbjct: 219 TKAAGDMSSMTKDK 232
>Os04g0624800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 376
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/253 (41%), Positives = 160/253 (63%), Gaps = 24/253 (9%)
Query: 8 VRTVRVRNISDLAGEREVREFFSFSGEIEHVDIRCDGVATGRTAYVTFKDPKALEIALLL 67
V T++V N+S A E+++REFFSFSG I HV+++ G + AY+TF+D + E A+LL
Sbjct: 2 VSTIKVHNVSLEASEQDIREFFSFSGVIVHVEMQS-GDERSQFAYITFEDDEGAERAMLL 60
Query: 68 SGATIVDRVVNITPAEDYIYIPVTDQQLXXXXXXXXXXXXAPNADLDQPTEANASPTTGR 127
+GATIVD V ITPA +Y QL P A L NA
Sbjct: 61 TGATIVDMSVIITPATNY--------QL-------------PAAVLADIESKNAGGMESA 99
Query: 128 VYVSKAHDVMTTVIARGSAMRQDAVNKAKAFDEKHQLRANASAKINSFDKRVGISEKINS 187
+ KA D + +++A+G + +DA+ +AK+FDEKHQL + A+AK+ S D+++G+S+K ++
Sbjct: 100 L--RKAEDAVVSMLAKGFVLGKDALERAKSFDEKHQLTSTATAKVTSLDRKMGLSQKFST 157
Query: 188 GITVVNEKVKSVDQRLHVSDKTMAALLAAERKLNDTGSAVKTNRYVSAGTSWLNGAFSKV 247
G VVNEK+K +DQ+ V++KT +AL AAE+ ++ GSA+ +NRY+ G +W+ A+SKV
Sbjct: 158 GTLVVNEKMKEMDQKYQVAEKTKSALAAAEQTVSTAGSAIMSNRYILTGAAWVTDAYSKV 217
Query: 248 AKAGHVAGSRTRE 260
A AG++++E
Sbjct: 218 ATTATDAGAKSKE 230
>Os04g0641400 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 251
Score = 127 bits (320), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 136/249 (54%), Gaps = 31/249 (12%)
Query: 10 TVRVRNISDLAGEREVREFFSFSGEIEHVDIRCDGVATGRTAYVTFKDPKALEIALLLSG 69
TV V N+S A E ++ EFFSFSG IEH+++ G G TAYVTFK+P +LE A+LLSG
Sbjct: 7 TVEVTNLSSRASESDLHEFFSFSGAIEHIELIRSG-EYGSTAYVTFKEPYSLETAVLLSG 65
Query: 70 ATIVDRVVNIT----PAEDYIYIPV----TDQQLXXXXXXXXXXXXAPNADLDQPTEANA 121
ATIVD+ V I P E Y + T++++ Q + N+
Sbjct: 66 ATIVDQPVCIARWGQPNEPYNFWDTPNWYTEEEIEYRTY--------------QTCQFNS 111
Query: 122 SPTTGRVYVSKAHDVMTTVIARGSAMRQDAVNKAKAFDEKHQLRANASAKINSFDKRVGI 181
+P ++ A DV+ T++ARG + +DA+ +A+AFDE HQ+ A A+AK KR+G+
Sbjct: 112 TPQEA---LTIAQDVVKTMLARGYVLSKDALARARAFDESHQVTATAAAKAAELSKRIGL 168
Query: 182 SEKINSGIT----VVNEKVKSVDQRLHVSDKTMAALLAAERKLNDTGSAVKTNRYVSAGT 237
++++ SG+T ++SVD+ HVS+ T A R + + T+ Y SAG
Sbjct: 169 TDRV-SGLTDRVSAGVGAIRSVDETYHVSETTKTVATATGRTAVKVVNGIMTSSYFSAGA 227
Query: 238 SWLNGAFSK 246
L+ A +
Sbjct: 228 MMLSDALHR 236
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.128 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,701,835
Number of extensions: 272109
Number of successful extensions: 734
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 720
Number of HSP's successfully gapped: 6
Length of query: 278
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 178
Effective length of database: 11,814,401
Effective search space: 2102963378
Effective search space used: 2102963378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)