Os04g0641400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os04g0641400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.39 | 0.263 | 9.98 | -0.811 | 0.113 | 0.678 | 0.776 | -1.78 | 0.0451 | 10.3 | 26.6 | 1288 | -- | -- |
| 32.46 | 0.265 | 9.94 | -0.419 | 0.119 | 0.522 | 0.949 | -- | 0.0719 | 9.9 | 25.54 | 1289 | -- | -- |
| 33.26 | 0.269 | 9.98 | -0.8 | 0.148 | 0.687 | -- | -1.83 | 0.0304 | 13.2 | 26.24 | 1283 | -- | -- |
| 34.18 | 0.272 | 9.92 | -0.354 | 0.142 | 0.495 | -- | -- | 0.136 | 13.5 | 26.3 | 1305 | -- | -- |
| 34.44 | 0.273 | 9.98 | -0.764 | -- | 0.631 | -- | -1.66 | 0.0375 | -- | 26.33 | 1337 | -- | -- |
| 42.1 | 0.304 | 9.92 | -0.222 | 0.0352 | -- | 0.884 | -- | 0.148 | 8.78 | -- | -- | -- | -- |
| 44.49 | 0.312 | 9.92 | -0.19 | 0.0675 | -- | -- | -- | 0.15 | 13.2 | -- | -- | -- | -- |
| 35.26 | 0.277 | 9.93 | -0.346 | -- | 0.456 | -- | -- | 0.131 | -- | 26.5 | 1356 | -- | -- |
| 37.14 | 0.284 | 9.91 | -- | 0.152 | 0.428 | -- | -- | 0.175 | 13.6 | 26.6 | 1287 | -- | -- |
| 44.77 | 0.313 | 9.92 | -0.192 | -- | -- | -- | -- | 0.149 | -- | -- | -- | -- | -- |
| 45.44 | 0.315 | 9.92 | -- | 0.0708 | -- | -- | -- | 0.171 | 13.3 | -- | -- | -- | -- |
| 38.16 | 0.288 | 9.91 | -- | -- | 0.389 | -- | -- | 0.204 | -- | 27.88 | 1305 | -- | -- |
| 45.75 | 0.316 | 9.92 | -- | -- | -- | -- | -- | 0.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.95 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 9 |
| 3 | 30.61 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 4 | 30.66 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 4 |
| 5 | 30.70 | humidity | 60 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 84 | 31.24 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 16 |
| 88 | 31.26 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 9 |
| 111 | 31.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 113 | 31.37 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 3 |
| 118 | 31.38 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 133 | 31.40 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 182 | 31.52 | humidity | 50 | 1440 | > th | dose dependent | sin | 18 | NA |
| 183 | 31.52 | humidity | 80 | 1440 | < th | dose dependent | sin | 13 | NA |
| 189 | 31.53 | radiation | 10 | 1440 | < th | dose dependent | rect. | 16 | 12 |
| 197 | 31.55 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 14 |
| 200 | 31.55 | radiation | 10 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 209 | 31.57 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 215 | 31.58 | radiation | 10 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 217 | 31.58 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 19 |
| 231 | 31.60 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 2 |
| 242 | 31.60 | humidity | 90 | 1440 | < th | dose dependent | sin | 17 | NA |
| 278 | 31.67 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 325 | 31.71 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 411 | 31.79 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 417 | 31.80 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 418 | 31.80 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 15 |
| 460 | 31.84 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 15 |
| 462 | 31.84 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 17 |
| 470 | 31.85 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 10 |
| 524 | 31.89 | radiation | 10 | 1440 | < th | dose dependent | sin | 15 | NA |
| 581 | 31.93 | radiation | 30 | 1440 | < th | dose independent | rect. | 19 | 13 |
| 651 | 31.98 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 674 | 31.99 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 713 | 32.02 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 761 | 32.06 | radiation | 30 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 767 | 32.06 | radiation | 30 | 1440 | < th | dose independent | rect. | 2 | 6 |
| 796 | 32.07 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 887 | 32.11 | radiation | 10 | 1440 | > th | dose independent | sin | 14 | NA |
| 921 | 32.13 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 936 | 32.13 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 18 |
| 949 | 32.14 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 986 | 32.15 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 3 |