BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0641400 Os04g0641400|AK109401
(251 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0641400 RNA-binding region RNP-1 (RNA recognition moti... 422 e-118
Os03g0713600 RNA-binding region RNP-1 (RNA recognition moti... 132 3e-31
Os04g0594400 RNA-binding region RNP-1 (RNA recognition moti... 131 4e-31
Os06g0112400 RNA-binding region RNP-1 (RNA recognition moti... 129 2e-30
Os04g0624800 RNA-binding region RNP-1 (RNA recognition moti... 119 2e-27
Os03g0748900 RNA-binding region RNP-1 (RNA recognition moti... 119 2e-27
>Os04g0641400 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 251
Score = 422 bits (1084), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/251 (83%), Positives = 209/251 (83%)
Query: 1 MSGTGYTVEVTNLSSRASESDLHEFFSFSGAIEHIELIRSGEYGSTAYVTFKEPYSLETA 60
MSGTGYTVEVTNLSSRASESDLHEFFSFSGAIEHIELIRSGEYGSTAYVTFKEPYSLETA
Sbjct: 1 MSGTGYTVEVTNLSSRASESDLHEFFSFSGAIEHIELIRSGEYGSTAYVTFKEPYSLETA 60
Query: 61 VLLSGATIVDQPVCIARWGQPNEPYNFWDTPNWYTEEEIEYRTYQTCQFNSTPQEALTIA 120
VLLSGATIVDQPVCIARWGQPNEPYNFWDTPNWYTEEEIEYRTYQTCQFNSTPQEALTIA
Sbjct: 61 VLLSGATIVDQPVCIARWGQPNEPYNFWDTPNWYTEEEIEYRTYQTCQFNSTPQEALTIA 120
Query: 121 QDVVKTMLARGYVLSKDALARARAFDESHQVXXXXXXXXXELSKRIGLTDRVSGLTDRVS 180
QDVVKTMLARGYVLSKDALARARAFDESHQV ELSKRIGLTDRVSGLTDRVS
Sbjct: 121 QDVVKTMLARGYVLSKDALARARAFDESHQVTATAAAKAAELSKRIGLTDRVSGLTDRVS 180
Query: 181 AGVGAIRSVDETYHVSEXXXXXXXXXXXXXXXXXNGIMTSSYFSAGAMMLSXXXXXXXXX 240
AGVGAIRSVDETYHVSE NGIMTSSYFSAGAMMLS
Sbjct: 181 AGVGAIRSVDETYHVSETTKTVATATGRTAVKVVNGIMTSSYFSAGAMMLSDALHRAAQA 240
Query: 241 XXXXXXXGRHN 251
GRHN
Sbjct: 241 AADLAAHGRHN 251
>Os03g0713600 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 284
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 120/225 (53%), Gaps = 17/225 (7%)
Query: 7 TVEVTNLSSRASESDLHEFFSFSGAIEHIELIRSGEYGSTAYVTFKEPYSLETAVLLSGA 66
TV+V+N+S AS+ ++ EFFSFSG IE++E+ E AYVTFK+ +TAVLLSGA
Sbjct: 5 TVKVSNISLNASKREITEFFSFSGDIEYVEMQSESERSQLAYVTFKDSQGADTAVLLSGA 64
Query: 67 TIVDQPVCIARWGQPNEPYNFWDTPNWYTEEEIEYRTYQTCQFNSTPQEALTIAQDVVKT 126
TIVD+ V I P + P + R + +S+ + + A+DVV +
Sbjct: 65 TIVDRSVIIT-------PVVNYQLPP-------DARKQSAGEKSSSAESVVRKAEDVVSS 110
Query: 127 MLARGYVLSKDALARARAFDESHQVXXXXXXXXXELSKRIGLTDRVSGLTDRVSAGVGAI 186
MLA+G+VLSKDAL AR+FDE H + L ++ G+++++S R G +
Sbjct: 111 MLAKGFVLSKDALNVARSFDERHNILSNATATVASLDRQYGVSEKIS--LGRAIVG-SKV 167
Query: 187 RSVDETYHVSEXXXXXXXXXXXXXXXXXNGIMTSSYFSAGAMMLS 231
+ VD+ Y VSE + IM + Y SAGA L+
Sbjct: 168 KEVDDRYQVSELTKSALAAAEQKASIASSAIMNNQYVSAGASWLT 212
>Os04g0594400 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 314
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 19/221 (8%)
Query: 7 TVEVTNLSSRASESDLHEFFSFSGAIEHIELIRSGEYGSTAYVTFKEPYSLETAVLLSGA 66
TV+V+N+S +AS D+ EFFSFSG I H+E+ S E AY+TFK+ ETA+LL+GA
Sbjct: 8 TVKVSNVSLKASLRDVKEFFSFSGDIVHVEMQSSDELSQVAYITFKDNQGSETAMLLTGA 67
Query: 67 TIVDQPVCIARWGQPNEPYNFWDTPNWYTEEEIEYRTYQTCQFNSTPQEALTIAQDVVKT 126
TIVD V + TP T+ E+ + + AL A+D+V T
Sbjct: 68 TIVDMAVIV--------------TP--ATDYELPASVLAALEPKDSKPSALQKAEDIVGT 111
Query: 127 MLARGYVLSKDALARARAFDESHQVXXXXXXXXXELSKRIGLTDRVSGLTDRVSAGVGAI 186
MLA+G++L +DAL RA+A DE HQ+ K++GL++++S T V+ +
Sbjct: 112 MLAKGFILGRDALDRAKALDEKHQLTSTATARVSSFDKKMGLSEKISVGTSAVN---DKV 168
Query: 187 RSVDETYHVSEXXXXXXXXXXXXXXXXXNGIMTSSYFSAGA 227
+ +D+ Y VSE + IM + Y GA
Sbjct: 169 KEMDQKYQVSEKTRSALAAAEQSVSTAGSAIMKNRYVLTGA 209
>Os06g0112400 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 261
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 114/221 (51%), Gaps = 13/221 (5%)
Query: 7 TVEVTNLSSRASESDLHEFFSFSGAIEHIELIRSGEYGSTAYVTFKEPYSLETAVLLSGA 66
TV+VTN+S A+ D+ EFFSFSG IEH+E+ E+ AYVTFK+P ETA+LLSGA
Sbjct: 8 TVKVTNVSLSATVQDIKEFFSFSGDIEHVEMQSGDEWSQVAYVTFKDPQGAETALLLSGA 67
Query: 67 TIVDQPVCIARWGQPNEPYNFWDTPNWYTEEEIEYRTYQTCQFNSTPQEALTIAQDVVKT 126
TIVD V IA + +P P Y+ + S + A+DVV T
Sbjct: 68 TIVDLSVIIAPAPE-YQPPPTSSAPPMYSATSVPV---------SEDNNVVHKAEDVVST 117
Query: 127 MLARGYVLSKDALARARAFDESHQVXXXXXXXXXELSKRIGLTDRVSGLTDRVSAGVGAI 186
MLA+G+ L KDA+ +A+AFDE H + ++IGL+++ + T V+ V
Sbjct: 118 MLAKGFTLGKDAVGKAKAFDEKHGFTSTAGAKVASIDRKIGLSEKFTIGTSIVNEKV--- 174
Query: 187 RSVDETYHVSEXXXXXXXXXXXXXXXXXNGIMTSSYFSAGA 227
+ +D+ + VS+ + IM + Y GA
Sbjct: 175 KEMDQKFQVSDKTKSAFAAAEQKVSTAGSAIMKNRYVFTGA 215
>Os04g0624800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 376
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 112/221 (50%), Gaps = 17/221 (7%)
Query: 7 TVEVTNLSSRASESDLHEFFSFSGAIEHIELIRSGEYGSTAYVTFKEPYSLETAVLLSGA 66
T++V N+S ASE D+ EFFSFSG I H+E+ E AY+TF++ E A+LL+GA
Sbjct: 4 TIKVHNVSLEASEQDIREFFSFSGVIVHVEMQSGDERSQFAYITFEDDEGAERAMLLTGA 63
Query: 67 TIVDQPVCIARWGQPNEPYNFWDTPNWYTEEEIEYRTYQTCQFNSTPQEALTIAQDVVKT 126
TIVD V I P + P +IE + + AL A+D V +
Sbjct: 64 TIVDMSVIIT-------PATNYQLPAAVL-ADIESKNAGGM------ESALRKAEDAVVS 109
Query: 127 MLARGYVLSKDALARARAFDESHQVXXXXXXXXXELSKRIGLTDRVSGLTDRVSAGVGAI 186
MLA+G+VL KDAL RA++FDE HQ+ L +++GL+ + S T V+ +
Sbjct: 110 MLAKGFVLGKDALERAKSFDEKHQLTSTATAKVTSLDRKMGLSQKFSTGTLVVNE---KM 166
Query: 187 RSVDETYHVSEXXXXXXXXXXXXXXXXXNGIMTSSYFSAGA 227
+ +D+ Y V+E + IM++ Y GA
Sbjct: 167 KEMDQKYQVAEKTKSALAAAEQTVSTAGSAIMSNRYILTGA 207
>Os03g0748900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 278
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 117/229 (51%), Gaps = 21/229 (9%)
Query: 12 NLSSRASESDLHEFFSFSGAIEHIELIRSG-EYGSTAYVTFKEPYSLETAVLLSGATIVD 70
N+S A E ++ EFFSFSG IEH+++ G G TAYVTFK+P +LE A+LLSGATIVD
Sbjct: 15 NISDLAGEREVREFFSFSGEIEHVDIRCDGVATGRTAYVTFKDPKALEIALLLSGATIVD 74
Query: 71 QPVCIARWGQPNEPYNFWDTPNW----------YTEEEIEYRTYQTCQFNSTPQEA---L 117
+ V I P E Y + + T Q + N++P +
Sbjct: 75 RVVNIT----PAEDYIYIPVTDQQLVVSEVVGEVTSTAPNADLDQPTEANASPTTGRVYV 130
Query: 118 TIAQDVVKTMLARGYVLSKDALARARAFDESHQVXXXXXXXXXELSKRIGLTDRVSGLTD 177
+ A DV+ T++ARG + +DA+ +A+AFDE HQ+ KR+G++++++
Sbjct: 131 SKAHDVMTTVIARGSAMRQDAVNKAKAFDEKHQLRANASAKINSFDKRVGISEKINSGIT 190
Query: 178 RVSAGVGAIRSVDETYHVSEXXXXXXXXXXXXXXXXXNGIMTSSYFSAG 226
V+ V +SVD+ HVS+ + + T+ Y SAG
Sbjct: 191 VVNEKV---KSVDQRLHVSDKTMAALLAAERKLNDTGSAVKTNRYVSAG 236
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.129 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,174,102
Number of extensions: 212192
Number of successful extensions: 400
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 6
Length of query: 251
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 153
Effective length of database: 11,918,829
Effective search space: 1823580837
Effective search space used: 1823580837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)