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Os06g0112400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.6 (0.0123) R2 : 0.129
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.214 (0.026) R2dN8 : 0.167 R2N8 : 0.129
σ : 0.232
deviance : 24.76
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
14.53 0.179 12.6 0.0802 0.185 -0.488 -0.222 0.444 0.151 20.5 21 2257 -- --
14.66 0.178 12.6 0.108 0.191 -0.604 -0.245 -- 0.157 20.4 20.59 2404 -- --
14.68 0.178 12.6 0.0807 0.187 -0.476 -- 0.472 0.149 20.5 21 2285 -- --
14.84 0.179 12.6 0.121 0.191 -0.615 -- -- 0.16 20.4 20.4 2382 -- --
16.61 0.19 12.6 0.0791 -- -0.484 -- 0.443 0.14 -- 21.39 2276 -- --
18.91 0.204 12.6 0.343 0.201 -- -0.26 -- 0.254 21 -- -- -- --
19.14 0.205 12.6 0.352 0.202 -- -- -- 0.254 20.9 -- -- -- --
16.75 0.191 12.6 0.115 -- -0.659 -- -- 0.156 -- 20.48 2283 -- --
15.1 0.181 12.6 -- 0.188 -0.684 -- -- 0.136 20.3 20.5 2420 -- --
21.49 0.217 12.6 0.352 -- -- -- -- 0.253 -- -- -- -- --
22.41 0.221 12.6 -- 0.202 -- -- -- 0.215 21.1 -- -- -- --
17 0.192 12.6 -- -- -0.719 -- -- 0.133 -- 20.57 2308 -- --
24.76 0.232 12.6 -- -- -- -- -- 0.214 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 14.30 humidity 90 14400 > th dose dependent rect. 3 11
2 14.30 humidity 90 14400 > th dose dependent rect. 2 14
9 14.35 humidity 80 43200 < th dose independent rect. 6 1
14 14.36 humidity 90 14400 > th dose dependent rect. 1 18
15 14.37 humidity 90 14400 > th dose dependent sin 4 NA
22 14.39 humidity 80 43200 > th dose independent rect. 6 1
58 14.50 humidity 90 14400 > th dose dependent rect. 7 22
60 14.50 humidity 90 14400 > th dose dependent rect. 18 23
67 14.51 humidity 90 14400 > th dose dependent rect. 18 21
72 14.52 temperature 20 1440 < th dose independent rect. 5 2
74 14.52 humidity 90 14400 > th dose dependent no NA NA
97 14.53 humidity 90 14400 > th dose dependent rect. 11 23
100 14.54 humidity 50 43200 < th dose independent rect. 8 1
126 14.56 humidity 90 14400 > th dose independent rect. 2 9
141 14.58 temperature 20 1440 > th dose independent rect. 6 1
148 14.59 humidity 50 43200 > th dose independent rect. 8 1
149 14.59 humidity 60 43200 < th dose dependent rect. 7 2
184 14.64 humidity 90 14400 > th dose dependent rect. 7 2
194 14.65 temperature 20 720 > th dose independent rect. 11 21
203 14.66 humidity 80 43200 < th dose independent rect. 3 5
231 14.69 radiation 1 14400 < th dose dependent rect. 7 1
243 14.71 humidity 90 14400 > th dose independent sin 6 NA
244 14.71 wind 3 43200 < th dose independent rect. 6 1
245 14.71 temperature 20 4320 > th dose independent rect. 18 1
248 14.71 temperature 20 4320 > th dose independent rect. 18 4
252 14.71 temperature 20 720 > th dose independent rect. 19 22
256 14.72 radiation 30 4320 < th dose independent rect. 16 16
260 14.72 temperature 20 1440 < th dose dependent rect. 4 1
265 14.73 radiation 1 14400 < th dose independent rect. 7 1
276 14.73 humidity 80 43200 < th dose dependent rect. 6 1
277 14.73 humidity 90 14400 > th dose dependent rect. 5 2
284 14.74 wind 3 43200 > th dose independent rect. 6 1
285 14.74 radiation 1 14400 > th dose independent rect. 7 1
286 14.74 wind 1 14400 > th dose independent rect. 23 3
299 14.74 wind 1 43200 > th dose dependent rect. 1 1
300 14.74 wind 1 43200 > th dose dependent rect. 5 1
305 14.75 temperature 20 4320 < th dose independent rect. 18 1
314 14.75 humidity 60 43200 < th dose dependent rect. 20 13
324 14.76 wind 9 43200 < th dose dependent rect. 5 1
326 14.76 radiation 10 4320 < th dose dependent rect. 3 2
327 14.77 temperature 20 4320 < th dose independent rect. 18 4
340 14.77 temperature 20 720 < th dose independent rect. 9 22
341 14.77 humidity 90 14400 > th dose dependent sin 15 NA
351 14.78 wind 3 43200 < th dose independent rect. 5 6
353 14.78 wind 3 43200 > th dose independent rect. 5 7
355 14.78 wind 3 43200 < th dose independent rect. 4 9
360 14.78 humidity 90 14400 > th dose independent rect. 18 19
362 14.78 temperature 20 720 > th dose independent rect. 1 23
377 14.79 temperature 20 1440 < th dose independent rect. 22 16
383 14.79 temperature 20 720 > th dose independent rect. 3 23
386 14.79 humidity 80 14400 > th dose dependent rect. 13 1
395 14.80 radiation 30 4320 < th dose independent rect. 4 4
413 14.80 wind 1 43200 > th dose dependent rect. 5 7
414 14.80 wind 9 43200 < th dose dependent rect. 5 7
417 14.81 radiation 30 4320 < th dose independent rect. 6 2
446 14.81 wind 1 43200 > th dose dependent rect. 5 4
447 14.81 wind 9 43200 < th dose dependent rect. 5 4
458 14.82 temperature 20 1440 < th dose independent sin 5 NA
460 14.82 wind 3 43200 > th dose independent rect. 6 3
462 14.82 radiation 10 4320 < th dose independent rect. 3 3
473 14.82 temperature 20 1440 > th dose independent rect. 22 16
516 14.83 wind 1 43200 < th dose dependent rect. 11 1
518 14.83 radiation 10 4320 > th dose dependent rect. 5 2
551 14.84 humidity 50 43200 > th dose independent rect. 21 12
553 14.84 humidity 50 43200 < th dose independent rect. 20 13
564 14.84 temperature 20 720 < th dose independent rect. 21 23
566 14.84 wind 9 43200 < th dose dependent rect. 1 1
582 14.85 temperature 20 1440 > th dose independent sin 5 NA
583 14.85 temperature 20 720 > th dose independent no NA NA
615 14.85 humidity 80 14400 > th dose dependent rect. 10 1
621 14.85 wind 3 43200 < th dose dependent rect. 6 6
640 14.86 temperature 20 720 < th dose independent no NA NA
647 14.86 temperature 20 1440 < th dose independent rect. 3 10
669 14.86 temperature 20 720 < th dose independent rect. 15 23
671 14.86 temperature 20 720 < th dose independent rect. 18 23
692 14.86 wind 1 43200 > th dose dependent rect. 1 12
693 14.86 wind 9 43200 < th dose dependent rect. 1 12
695 14.86 wind 9 43200 < th dose dependent rect. 23 14
742 14.87 humidity 50 43200 > th dose dependent rect. 20 2
746 14.87 temperature 20 4320 < th dose dependent rect. 21 3
757 14.87 wind 9 43200 < th dose dependent rect. 22 11
761 14.87 wind 1 43200 > th dose dependent rect. 23 14
771 14.88 radiation 10 4320 < th dose independent rect. 1 5
790 14.88 wind 1 43200 > th dose independent rect. 6 20
799 14.88 temperature 20 720 > th dose independent rect. 14 23
801 14.88 temperature 20 4320 < th dose dependent rect. 22 1
827 14.88 wind 1 43200 < th dose dependent rect. 7 19
830 14.89 temperature 20 1440 > th dose independent rect. 22 1
832 14.89 temperature 20 1440 < th dose independent rect. 22 1
840 14.89 temperature 20 1440 > th dose independent rect. 3 8
876 14.89 temperature 20 720 < th dose independent rect. 3 23
885 14.89 humidity 50 43200 > th dose dependent rect. 19 4
904 14.90 radiation 1 4320 > th dose independent rect. 4 1
908 14.90 wind 9 43200 < th dose independent rect. 10 2
926 14.90 temperature 20 1440 > th dose independent rect. 3 10
956 14.90 humidity 90 14400 > th dose independent rect. 7 23
958 14.90 wind 9 43200 < th dose dependent sin 7 NA
986 14.90 wind 1 43200 > th dose dependent rect. 22 11