BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0112400 Os06g0112400|AK099246
(261 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G16840.2 | chr5:5536042-5538026 FORWARD LENGTH=261 299 1e-81
AT4G17720.1 | chr4:9862660-9864498 REVERSE LENGTH=314 296 7e-81
AT5G46870.1 | chr5:19015486-19016990 FORWARD LENGTH=296 293 4e-80
AT1G67950.3 | chr1:25478884-25480420 REVERSE LENGTH=280 243 6e-65
AT5G32450.1 | chr5:12079707-12081317 FORWARD LENGTH=268 230 7e-61
AT1G14340.1 | chr1:4897709-4898776 FORWARD LENGTH=245 154 6e-38
AT3G01210.1 | chr3:72182-73159 FORWARD LENGTH=250 120 7e-28
>AT5G16840.2 | chr5:5536042-5538026 FORWARD LENGTH=261
Length = 260
Score = 299 bits (765), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 155/238 (65%), Positives = 184/238 (77%), Gaps = 9/238 (3%)
Query: 6 VRTVKVTNVSLSATVQDIKEFFSFSGDIEHVEMQSGDEWSQVAYVTFKDPQGAETALLLS 65
VR+VKV N+S AT DIKEFFSFSG++E +++QS +E S AYVTFK+ QGAETA+LLS
Sbjct: 5 VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEHS--AYVTFKETQGAETAVLLS 62
Query: 66 GATIVDLSVIIAPAPEYQPPPTSSAPPMYSATSVPVSEDNNVVHKAEDVVSTMLAKGFTL 125
GA+I D SVII AP Y PP A S +VV KAEDVVS+MLAKGF L
Sbjct: 63 GASIADQSVIIELAPNYSPPAAPHAETQSSGA-------ESVVQKAEDVVSSMLAKGFIL 115
Query: 126 GKDAVGKAKAFDEKHGFTSTAGAKVASIDRKIGLSEKFTIGTSIVNEKVKEMDQKFQVSD 185
GKDAVGKAKAFDEKHGFTSTA A VAS+D+KIGLS+K T GTS+VNEK+K +DQ FQV++
Sbjct: 116 GKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQVTE 175
Query: 186 KTKSAFAAAEQKVSTAGSAIMKNRYVFTGASWVTNAFNKVAKAATDVGTMTKEKMAAE 243
+TKS +AAAEQ VS+AGSA+MKNRYV TG SW AFN+VA+AA +VG TKEK+ AE
Sbjct: 176 RTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKVEAE 233
>AT4G17720.1 | chr4:9862660-9864498 REVERSE LENGTH=314
Length = 313
Score = 296 bits (758), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 160/243 (65%), Positives = 192/243 (79%), Gaps = 5/243 (2%)
Query: 8 TVKVTNVSLSATVQDIKEFFSFSGDIEHVEMQSGDEWSQVAYVTFKDPQGAETALLLSGA 67
TVKV+NVSL AT +D+KEFFSFSGDI ++E QS E +++AYVTFKD QGAETA+LLSGA
Sbjct: 5 TVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVLLSGA 64
Query: 68 TIVDLSVIIAPAPEYQ--PPPTSSAPPMYSATSVPVSEDNNVVHKAEDVVSTMLAKGFTL 125
TIVD SVI++ AP+YQ P +S P S S P + D+ V+ KAEDVVS+MLAKGF L
Sbjct: 65 TIVDSSVIVSMAPDYQLSPEALASLEPKDSNKS-PKAGDS-VLRKAEDVVSSMLAKGFIL 122
Query: 126 GKDAVGKAKAFDEKHGFTSTAGAKVASIDRKIGLSEKFTIGTSIVNEKVKEMDQKFQVSD 185
GKDA+ KAK+ DEKH TSTA AKVAS D+KIG ++K GT +V EKV+E+DQK+QVS+
Sbjct: 123 GKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGEKVREVDQKYQVSE 182
Query: 186 KTKSAFAAAEQKVSTAGSAIMKNRYVFTGASWVTNAFNKVAKAATDVGTMTKEKMA-AED 244
KTKSA AAAEQ VS AGSAIMKNRYV TGA+WVT AFNKVAKAA +VG KEK+ AE+
Sbjct: 183 KTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQKAKEKVGMAEE 242
Query: 245 QHK 247
+ K
Sbjct: 243 EDK 245
>AT5G46870.1 | chr5:19015486-19016990 FORWARD LENGTH=296
Length = 295
Score = 293 bits (751), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 148/237 (62%), Positives = 186/237 (78%), Gaps = 4/237 (1%)
Query: 8 TVKVTNVSLSATVQDIKEFFSFSGDIEHVEMQSGDEWSQVAYVTFKDPQGAETALLLSGA 67
TVKV+NVSL AT +D+KEFFSFSGDI ++E QS ++ S++AYVTFKD QGAETA+LL+G+
Sbjct: 5 TVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVLLTGS 64
Query: 68 TIVDLSVIIAPAPEYQPPPTSSAP----PMYSATSVPVSEDNNVVHKAEDVVSTMLAKGF 123
TIVD SV + +P+YQ PP + A + +S P ED +V KAEDVVS M++KGF
Sbjct: 65 TIVDSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFRKAEDVVSGMISKGF 124
Query: 124 TLGKDAVGKAKAFDEKHGFTSTAGAKVASIDRKIGLSEKFTIGTSIVNEKVKEMDQKFQV 183
LGKDA+ KAK+ DEKH TSTA A+V S D++IG +EK GT++V+EKVKE+DQKFQV
Sbjct: 125 VLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSEKVKEVDQKFQV 184
Query: 184 SDKTKSAFAAAEQKVSTAGSAIMKNRYVFTGASWVTNAFNKVAKAATDVGTMTKEKM 240
++KTKSA AAAEQ VS AGSAIMKNRYV TGA+WVT AFN+V+KAA +VG KEK+
Sbjct: 185 TEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEEVGQKAKEKV 241
>AT1G67950.3 | chr1:25478884-25480420 REVERSE LENGTH=280
Length = 279
Score = 243 bits (621), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 125/226 (55%), Positives = 166/226 (73%), Gaps = 5/226 (2%)
Query: 3 VKPVRTVKVTNVSLSATVQDIKEFFSFSGDIEHVEMQSGDEWSQVAYVTFKDPQGAETAL 62
V V+TVK++NVSL + +D+KEFFSFSGDI++VEM+S + SQVAYVTFKD QGAETA+
Sbjct: 25 VSGVKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQVAYVTFKDSQGAETAM 84
Query: 63 LLSGATIVDLSVIIAPAPEYQPPPTSSAPPMYSATSVPVSEDNNVVHKAEDVVSTMLAKG 122
LL+GA I DL V I PA YQ PP + A S S + V KAEDVV+ M+ +G
Sbjct: 85 LLTGAVIADLRVSITPAVNYQLPPEALA-----LDSQEHSFNGFSVKKAEDVVNIMVGRG 139
Query: 123 FTLGKDAVGKAKAFDEKHGFTSTAGAKVASIDRKIGLSEKFTIGTSIVNEKVKEMDQKFQ 182
+ LGKDA+ KAKAFD++H S A A +AS+D K+GLSEK +IGT++VNEK++++D+++Q
Sbjct: 140 YALGKDAMEKAKAFDDRHNLISNASATIASLDDKMGLSEKLSIGTTVVNEKLRDIDERYQ 199
Query: 183 VSDKTKSAFAAAEQKVSTAGSAIMKNRYVFTGASWVTNAFNKVAKA 228
V + TKSA AAAE+ +A +A+M N YV +GASW +NAF V KA
Sbjct: 200 VREITKSALAAAEETAISARTALMANPYVSSGASWFSNAFGAVTKA 245
>AT5G32450.1 | chr5:12079707-12081317 FORWARD LENGTH=268
Length = 267
Score = 230 bits (586), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 129/251 (51%), Positives = 168/251 (66%), Gaps = 13/251 (5%)
Query: 3 VKPVRTVKVTNVSLSATVQDIKEFFSFSGDIEHVEMQSGDEWSQVAYVTFKDPQGAETAL 62
++ R+V+V NVS AT ++I EFFSFSGDIEH+E+Q S++A+VTF DP+ E AL
Sbjct: 1 MQTTRSVQVNNVSDLATEREIHEFFSFSGDIEHIEIQKEFGQSRIAFVTFTDPKALEIAL 60
Query: 63 LLSGATIVDLSVIIAPAPEY-QPPPTS------SAPPM---YSATSVPVSEDNN---VVH 109
LLSGATIVD V I A Y Q T +A P+ S T + D N V
Sbjct: 61 LLSGATIVDQIVTITRAENYVQRRETQEVRMLDNAMPLGLQESTTQTKTNMDGNSRAYVS 120
Query: 110 KAEDVVSTMLAKGFTLGKDAVGKAKAFDEKHGFTSTAGAKVASIDRKIGLSEKFTIGTSI 169
KA+DVV+T+LAKG LG+DAV KAKAFDEKH + A AKV+S D+++GL+EK ++G S
Sbjct: 121 KAQDVVATVLAKGSALGQDAVNKAKAFDEKHQLRANASAKVSSFDKRVGLTEKLSVGISA 180
Query: 170 VNEKVKEMDQKFQVSDKTKSAFAAAEQKVSTAGSAIMKNRYVFTGASWVTNAFNKVAKAA 229
VNEKVK +DQK QVSDKT +A AAE+K++ GSA+ +RYV GA+W + AF+KVA+
Sbjct: 181 VNEKVKSVDQKLQVSDKTMAAIFAAERKLNDTGSAVKSSRYVTAGAAWFSGAFSKVARVG 240
Query: 230 TDVGTMTKEKM 240
G+ TKEK
Sbjct: 241 QVAGSKTKEKF 251
>AT1G14340.1 | chr1:4897709-4898776 FORWARD LENGTH=245
Length = 244
Score = 154 bits (388), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 144/248 (58%), Gaps = 23/248 (9%)
Query: 1 MDVKPVRTVKVTNVSLSATVQDIKEFFSFSGDIEHVEMQSGDEWSQVAYVTFKDPQGAET 60
MD + V+VT +S S T D+ +FFSFSG I+ +++ E + AYV FKD ET
Sbjct: 1 MDHQFGYGVEVTGLSPSVTHNDLIDFFSFSGTIQDIDIVRSGEQACTAYVMFKDSYSQET 60
Query: 61 ALLLSGATIVDLSVIIAPAPEYQPPPTSSAPPMYSATSVPVSEDNNVVH----------- 109
A+LL+GATI+D V I ++ ++ATS ++++ H
Sbjct: 61 AVLLTGATILDQRVCITRWGQHHEEF-----DFWNATSRGFEDESDSQHYAQRSEFNAGE 115
Query: 110 ---KAEDVVSTMLAKGFTLGKDAVGKAKAFDEKHGFTSTAGAKVASIDRKIGLSEKFTIG 166
KA++VV MLA GF LGKDA+ KAKAFDE HG ++ A A+V+ ++++IGL++K G
Sbjct: 116 AVTKAQEVVKIMLATGFVLGKDALSKAKAFDESHGVSAAAVARVSQLEQRIGLTDKIFTG 175
Query: 167 TSIVNEKVKEMDQKFQVSDKTKSAFAAAEQKVSTAGSAIMKNRYVFTGASWVTNAFNKVA 226
E V+ DQ++ VSD KSA A + + A ++++ + Y +GA W++ A + A
Sbjct: 176 L----EAVRMTDQRYHVSDTAKSAVFATGRTAAAAATSVVNSSYFSSGALWLSGALERAA 231
Query: 227 KAATDVGT 234
KAA+D+GT
Sbjct: 232 KAASDLGT 239
>AT3G01210.1 | chr3:72182-73159 FORWARD LENGTH=250
Length = 249
Score = 120 bits (301), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 126/240 (52%), Gaps = 20/240 (8%)
Query: 10 KVTNVSLSATVQDIKEFFSFSGDIEHVEMQSGDEWSQVAYVTFKDPQGAETALLLSGATI 69
+VTN+S AT +D+ FFS G +E VE+ + AYVTF+D + A+LLSGATI
Sbjct: 9 QVTNLSPQATEKDVHRFFSHCGIVELVEITGCQGDALTAYVTFRDAYALDMAVLLSGATI 68
Query: 70 VDLSVIIAPAPEYQPPPTS-SAPPMYSATSVP----VSEDNNVVHKAEDVVSTMLAKGFT 124
VD +V I+ Y + YS T S + A+ VV TMLAKG+
Sbjct: 69 VDQTVWISVYGVYLHESNNLRQEEDYSVTVTRSDAFASSPGEAITVAQQVVQTMLAKGYV 128
Query: 125 LGKDAVGKAKAFDEKHGFTSTAGAKVASIDRKIGLSEKFTIGTSIVNEKVKEMDQKFQVS 184
L KDA+GKAKA DE F+S K+A I +GL++ I +S+ E V+ D+K+ S
Sbjct: 129 LSKDAIGKAKALDESQRFSSLVATKLAEISHYLGLTQN--IQSSM--ELVRSADEKYHFS 184
Query: 185 DKTKSAF-----------AAAEQKVSTAGSAIMKNRYVFTGASWVTNAFNKVAKAATDVG 233
D TKSA + + A ++++ +RY GA W ++A + AKAA +G
Sbjct: 185 DFTKSAVLVTGTAAVAAATITGKVAAAAATSVVNSRYFANGALWFSDALGRAAKAAAHIG 244
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.310 0.124 0.342
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,349,420
Number of extensions: 212163
Number of successful extensions: 1332
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1322
Number of HSP's successfully gapped: 7
Length of query: 261
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 164
Effective length of database: 8,447,217
Effective search space: 1385343588
Effective search space used: 1385343588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 110 (47.0 bits)