FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0624800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.13 (0.0211) R2 : 0.0163
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.122 (0.0445) R2dN8 : 0.0211 R2N8 : 0.0163
σ : 0.398
deviance : 72.65
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
69.46 0.392 3.16 -0.0716 0.074 0.252 -0.275 -1.56 0.136 1.64 -0.044 5500 -- --
71.84 0.395 3.13 -0.104 0.0577 0.0527 -0.26 -- 0.121 1.54 0.04241 8051 -- --
69.74 0.389 3.16 -0.0651 0.0716 0.255 -- -1.54 0.135 2.39 0.02267 5500 -- --
72.08 0.398 3.14 -0.0996 0.0685 -0.219 -- -- 0.109 2.82 -0.06691 8050 -- --
70.09 0.39 3.16 -0.0558 -- 0.245 -- -1.55 0.137 -- -0.0002989 5500 -- --
71.87 0.397 3.14 -0.111 0.0613 -- -0.265 -- 0.108 1.55 -- -- -- --
72.13 0.398 3.14 -0.103 0.0663 -- -- -- 0.11 2.8 -- -- -- --
71.86 0.395 3.14 -0.0315 -- -0.18 -- -- 0.0853 -- 0.5029 13954 -- --
71.63 0.394 3.14 -- 0.0687 -0.184 -- -- 0.1 2.96 0.5044 13954 -- --
72.39 0.398 3.14 -0.0998 -- -- -- -- 0.111 -- -- -- -- --
72.41 0.398 3.13 -- 0.0643 -- -- -- 0.121 2.79 -- -- -- --
71.76 0.395 3.14 -- -- -0.182 -- -- 0.1 -- 1.252 13998 -- --
72.65 0.398 3.13 -- -- -- -- -- 0.122 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.15 atmosphere 1005.0 10 > th dose dependent rect. 1 2
4 64.66 temperature 30.0 10 < th dose dependent rect. 2 1
5 64.70 wind 3.0 10 < th dose independent rect. 2 1
6 64.70 atmosphere 1015.0 10 < th dose dependent rect. 2 1
7 64.75 temperature 25.0 10 < th dose independent rect. 2 1
11 64.79 temperature 10.0 10 > th dose independent rect. 2 1
14 64.79 humidity 50.0 10 > th dose independent rect. 2 1
17 64.79 atmosphere 995.0 10 > th dose independent rect. 2 1
18 64.79 atmosphere 1010.0 10 < th dose independent rect. 2 1
20 64.79 radiation 1.0 10 < th dose independent rect. 2 1
25 64.79 precipitation 0.1 10 < th dose independent rect. 2 1
26 64.79 temperature 10.0 10 > th dose independent rect. 3 23
27 64.79 radiation 1.0 10 < th dose dependent rect. 2 1
32 64.79 precipitation 0.1 10 < th dose dependent rect. 2 1
33 64.82 wind 9.0 10 < th dose dependent rect. 2 1
35 64.85 atmosphere 1005.0 10 > th dose independent rect. 2 1
38 64.86 temperature 10.0 10 > th dose dependent rect. 2 1
39 64.88 humidity 50.0 10 > th dose dependent rect. 2 1
40 64.89 atmosphere 995.0 10 > th dose dependent rect. 2 1
44 64.92 wind 1.0 30 > th dose independent rect. 2 1
48 65.01 atmosphere 1005.0 90 > th dose independent rect. 1 2
53 65.03 humidity 90.0 10 > th dose independent rect. 2 1
56 65.06 atmosphere 995.0 10 > th dose independent rect. 3 23
111 65.30 precipitation 0.1 10 < th dose independent rect. 3 23
112 65.30 precipitation 0.1 10 < th dose dependent rect. 3 23
117 65.43 wind 9.0 10 < th dose independent rect. 3 23
140 65.68 humidity 90.0 90 < th dose independent rect. 1 2
162 66.16 wind 9.0 1440 < th dose independent rect. 3 1
163 66.16 temperature 10.0 1440 > th dose independent rect. 3 1
166 66.16 temperature 30.0 1440 < th dose independent rect. 3 1
170 66.16 humidity 50.0 1440 > th dose independent rect. 3 1
179 66.16 atmosphere 995.0 1440 > th dose independent rect. 3 1
180 66.16 radiation 1.0 1440 < th dose independent rect. 3 1
200 66.16 temperature 10.0 1440 > th dose independent rect. 4 23
203 66.16 radiation 1.0 1440 < th dose dependent rect. 3 1
209 66.16 radiation 10.0 43200 < th dose dependent rect. 3 1
269 66.81 humidity 50.0 90 > th dose independent rect. 3 22
320 67.16 humidity 90.0 270 < th dose independent rect. 23 3
397 67.58 wind 1.0 10 < th dose independent rect. 15 12
440 67.59 wind 1.0 10 < th dose independent rect. 21 6
470 67.66 temperature 30.0 90 < th dose independent rect. 3 22
480 67.75 temperature 25.0 270 > th dose independent rect. 22 5
528 67.89 wind 1.0 90 > th dose independent rect. 3 22
609 68.17 humidity 50.0 30 > th dose dependent rect. 3 23
675 68.26 temperature 20.0 720 > th dose dependent rect. 15 1
680 68.27 radiation 10.0 90 < th dose dependent rect. 3 22
738 68.30 temperature 15.0 270 > th dose dependent rect. 22 4
755 68.38 temperature 25.0 270 > th dose independent rect. 23 1
756 68.38 wind 1.0 30 > th dose dependent rect. 2 1
764 68.39 wind 3.0 10 < th dose dependent rect. 20 7
768 68.40 wind 1.0 10 < th dose independent rect. 7 20
794 68.47 radiation 1.0 90 < th dose independent rect. 3 22
809 68.51 wind 3.0 10 < th dose dependent rect. 18 9
816 68.54 humidity 90.0 270 < th dose independent rect. 22 10
819 68.55 wind 1.0 10 > th dose independent sin 16 NA
828 68.57 temperature 30.0 90 < th dose independent rect. 15 10
829 68.57 atmosphere 1015.0 30 < th dose independent rect. 3 22
830 68.57 temperature 25.0 270 > th dose dependent rect. 23 1
834 68.57 wind 9.0 90 < th dose dependent rect. 13 14
848 68.60 radiation 40.0 90 < th dose independent rect. 12 15
862 68.62 wind 1.0 10 > th dose independent rect. 3 22
866 68.62 humidity 90.0 90 < th dose dependent rect. 1 2
872 68.63 radiation 40.0 90 < th dose dependent rect. 12 15
910 68.72 wind 9.0 10 < th dose dependent rect. 13 14
911 68.72 temperature 10.0 30 > th dose dependent rect. 13 14
924 68.75 humidity 90.0 270 < th dose independent rect. 22 21
931 68.76 temperature 30.0 90 < th dose independent rect. 1 14
932 68.76 atmosphere 1010.0 30 < th dose independent rect. 13 14
948 68.79 temperature 10.0 90 > th dose dependent rect. 17 10
956 68.82 wind 7.0 90 < th dose independent rect. 13 14
968 68.83 wind 3.0 10 < th dose dependent rect. 11 16
981 68.85 humidity 90.0 270 < th dose dependent rect. 23 3
991 68.87 radiation 1.0 720 > th dose independent rect. 15 3
995 68.88 humidity 80.0 10 > th dose independent rect. 3 23