BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0641400 Os04g0641400|AK109401
(251 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14340.1 | chr1:4897709-4898776 FORWARD LENGTH=245 202 1e-52
AT3G01210.1 | chr3:72182-73159 FORWARD LENGTH=250 149 2e-36
AT5G32450.1 | chr5:12079707-12081317 FORWARD LENGTH=268 136 9e-33
AT4G17720.1 | chr4:9862660-9864498 REVERSE LENGTH=314 127 6e-30
AT5G16840.2 | chr5:5536042-5538026 FORWARD LENGTH=261 126 1e-29
AT5G46870.1 | chr5:19015486-19016990 FORWARD LENGTH=296 119 2e-27
AT1G67950.3 | chr1:25478884-25480420 REVERSE LENGTH=280 112 2e-25
>AT1G14340.1 | chr1:4897709-4898776 FORWARD LENGTH=245
Length = 244
Score = 202 bits (515), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/228 (47%), Positives = 146/228 (64%), Gaps = 10/228 (4%)
Query: 5 GYTVEVTNLSSRASESDLHEFFSFSGAIEHIELIRSGEYGSTAYVTFKEPYSLETAVLLS 64
GY VEVT LS + +DL +FFSFSG I+ I+++RSGE TAYV FK+ YS ETAVLL+
Sbjct: 6 GYGVEVTGLSPSVTHNDLIDFFSFSGTIQDIDIVRSGEQACTAYVMFKDSYSQETAVLLT 65
Query: 65 GATIVDQPVCIARWGQPNEPYNFWDTPNWYTEEEIEYRTY-QTCQFNSTPQEALTIAQDV 123
GATI+DQ VCI RWGQ +E ++FW+ + E+E + + Y Q +FN+ EA+T AQ+V
Sbjct: 66 GATILDQRVCITRWGQHHEEFDFWNATSRGFEDESDSQHYAQRSEFNAG--EAVTKAQEV 123
Query: 124 VKTMLARGYVLSKDALARARAFDESHQVXXXXXXXXXELSKRIGLTDRVSGLTDRVSAGV 183
VK MLA G+VL KDAL++A+AFDESH V +L +RI GLTD++ G+
Sbjct: 124 VKIMLATGFVLGKDALSKAKAFDESHGVSAAAVARVSQLEQRI-------GLTDKIFTGL 176
Query: 184 GAIRSVDETYHVSEXXXXXXXXXXXXXXXXXNGIMTSSYFSAGAMMLS 231
A+R D+ YHVS+ ++ SSYFS+GA+ LS
Sbjct: 177 EAVRMTDQRYHVSDTAKSAVFATGRTAAAAATSVVNSSYFSSGALWLS 224
>AT3G01210.1 | chr3:72182-73159 FORWARD LENGTH=250
Length = 249
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 116/197 (58%), Gaps = 12/197 (6%)
Query: 1 MSGTGYTVEVTNLSSRASESDLHEFFSFSGAIEHIELIRSGEYGSTAYVTFKEPYSLETA 60
M GY +VTNLS +A+E D+H FFS G +E +E+ TAYVTF++ Y+L+ A
Sbjct: 1 MYPCGYVAQVTNLSPQATEKDVHRFFSHCGIVELVEITGCQGDALTAYVTFRDAYALDMA 60
Query: 61 VLLSGATIVDQPVCIARWGQPNEPYNFWDTPNWYTEEEIEYRTYQTCQFNSTPQEALTIA 120
VLLSGATIVDQ V I+ +G ++ N EE+ ++ F S+P EA+T+A
Sbjct: 61 VLLSGATIVDQTVWISVYG-----VYLHESNNLRQEEDYSVTVTRSDAFASSPGEAITVA 115
Query: 121 QDVVKTMLARGYVLSKDALARARAFDESHQVXXXXXXXXXELSKRIGLTDRVSGLTDRVS 180
Q VV+TMLA+GYVLSKDA+ +A+A DES + E+S +GLT + + V
Sbjct: 116 QQVVQTMLAKGYVLSKDAIGKAKALDESQRFSSLVATKLAEISHYLGLTQNIQSSMELV- 174
Query: 181 AGVGAIRSVDETYHVSE 197
RS DE YH S+
Sbjct: 175 ------RSADEKYHFSD 185
>AT5G32450.1 | chr5:12079707-12081317 FORWARD LENGTH=268
Length = 267
Score = 136 bits (343), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 124/229 (54%), Gaps = 10/229 (4%)
Query: 4 TGYTVEVTNLSSRASESDLHEFFSFSGAIEHIELIRSGEYGST--AYVTFKEPYSLETAV 61
T +V+V N+S A+E ++HEFFSFSG IEHIE+ + E+G + A+VTF +P +LE A+
Sbjct: 3 TTRSVQVNNVSDLATEREIHEFFSFSGDIEHIEIQK--EFGQSRIAFVTFTDPKALEIAL 60
Query: 62 LLSGATIVDQPVCIAR---WGQPNEPYNFWDTPNWYTEEEIEYRTYQTCQFNSTPQEALT 118
LLSGATIVDQ V I R + Q E N E T + + ++
Sbjct: 61 LLSGATIVDQIVTITRAENYVQRRETQEVRMLDNAMPLGLQESTTQTKTNMDGNSRAYVS 120
Query: 119 IAQDVVKTMLARGYVLSKDALARARAFDESHQVXXXXXXXXXELSKRIGLTDRVSGLTDR 178
AQDVV T+LA+G L +DA+ +A+AFDE HQ+ KR+GLT++ L+
Sbjct: 121 KAQDVVATVLAKGSALGQDAVNKAKAFDEKHQLRANASAKVSSFDKRVGLTEK---LSVG 177
Query: 179 VSAGVGAIRSVDETYHVSEXXXXXXXXXXXXXXXXXNGIMTSSYFSAGA 227
+SA ++SVD+ VS+ + + +S Y +AGA
Sbjct: 178 ISAVNEKVKSVDQKLQVSDKTMAAIFAAERKLNDTGSAVKSSRYVTAGA 226
>AT4G17720.1 | chr4:9862660-9864498 REVERSE LENGTH=314
Length = 313
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 116/227 (51%), Gaps = 19/227 (8%)
Query: 4 TGYTVEVTNLSSRASESDLHEFFSFSGAIEHIELIRSGEYGSTAYVTFKEPYSLETAVLL 63
T TV+V+N+S A++ DL EFFSFSG I ++E E AYVTFK+ ETAVLL
Sbjct: 2 TMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVLL 61
Query: 64 SGATIVDQPVCIARWGQPNEPYNFWDTPNWYTEEEIEYRTYQTCQFNSTPQ---EALTIA 120
SGATIVD V ++ P++ E + + N +P+ L A
Sbjct: 62 SGATIVDSSVIVSM------------APDYQLSPEA-LASLEPKDSNKSPKAGDSVLRKA 108
Query: 121 QDVVKTMLARGYVLSKDALARARAFDESHQVXXXXXXXXXELSKRIGLTDRVSGLTDRVS 180
+DVV +MLA+G++L KDA+A+A++ DE HQ+ K+IG TD+++ T V
Sbjct: 109 EDVVSSMLAKGFILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKIN--TGTVV 166
Query: 181 AGVGAIRSVDETYHVSEXXXXXXXXXXXXXXXXXNGIMTSSYFSAGA 227
G +R VD+ Y VSE + IM + Y GA
Sbjct: 167 VG-EKVREVDQKYQVSEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGA 212
>AT5G16840.2 | chr5:5536042-5538026 FORWARD LENGTH=261
Length = 260
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 118/220 (53%), Gaps = 22/220 (10%)
Query: 7 TVEVTNLSSRASESDLHEFFSFSGAIEHIELIRSGEYGSTAYVTFKEPYSLETAVLLSGA 66
+V+V NLSS A+E D+ EFFSFSG +E I++ S E+ +AYVTFKE ETAVLLSGA
Sbjct: 7 SVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEH--SAYVTFKETQGAETAVLLSGA 64
Query: 67 TIVDQPVCIARWGQPNEPYNFWDTPNWYTEEEIEYRTYQTCQFNSTPQEALTIAQDVVKT 126
+I DQ V I PN Y+ P+ T+ +S + + A+DVV +
Sbjct: 65 SIADQSVIIELA--PN--YSPPAAPHAETQ-------------SSGAESVVQKAEDVVSS 107
Query: 127 MLARGYVLSKDALARARAFDESHQVXXXXXXXXXELSKRIGLTDRVSGLTDRVSAGVGAI 186
MLA+G++L KDA+ +A+AFDE H L ++IGL+ +++ T V+ I
Sbjct: 108 MLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNE---KI 164
Query: 187 RSVDETYHVSEXXXXXXXXXXXXXXXXXNGIMTSSYFSAG 226
++VD+ + V+E + +M + Y G
Sbjct: 165 KAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTG 204
>AT5G46870.1 | chr5:19015486-19016990 FORWARD LENGTH=296
Length = 295
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 17/225 (7%)
Query: 7 TVEVTNLSSRASESDLHEFFSFSGAIEHIELIRSGEYGSTAYVTFKEPYSLETAVLLSGA 66
TV+V+N+S A+E DL EFFSFSG I ++E + AYVTFK+ ETAVLL+G+
Sbjct: 5 TVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVLLTGS 64
Query: 67 TIVDQPVCIARWGQPNEPYNFWDTPNWYTEEEIEYRTYQTCQFNSTP-QEALTI---AQD 122
TIVD V + P P+ E + + +S+P +E +++ A+D
Sbjct: 65 TIVDSSVTVTMSPDYQLP------PDALASIE----SLKESNKSSSPTREDVSVFRKAED 114
Query: 123 VVKTMLARGYVLSKDALARARAFDESHQVXXXXXXXXXELSKRIGLTDRVSGLTDRVSAG 182
VV M+++G+VL KDA+A+A++ DE HQ+ KRIG T++++ T VS
Sbjct: 115 VVSGMISKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSEK 174
Query: 183 VGAIRSVDETYHVSEXXXXXXXXXXXXXXXXXNGIMTSSYFSAGA 227
V + VD+ + V+E + IM + Y GA
Sbjct: 175 V---KEVDQKFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGA 216
>AT1G67950.3 | chr1:25478884-25480420 REVERSE LENGTH=280
Length = 279
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 109/223 (48%), Gaps = 22/223 (9%)
Query: 7 TVEVTNLSSRASESDLHEFFSFSGAIEHIELIRSGEYGSTAYVTFKEPYSLETAVLLSGA 66
TV+++N+S S+ D+ EFFSFSG I+++E+ + AYVTFK+ ETA+LL+GA
Sbjct: 30 TVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQVAYVTFKDSQGAETAMLLTGA 89
Query: 67 TIVDQPVCIARWGQPNEPYNFWDTP--NWYTEEEIEYRTYQTCQFNSTPQEALTIAQDVV 124
I D V I TP N+ E Q FN ++ A+DVV
Sbjct: 90 VIADLRVSI--------------TPAVNYQLPPEALALDSQEHSFNGF---SVKKAEDVV 132
Query: 125 KTMLARGYVLSKDALARARAFDESHQVXXXXXXXXXELSKRIGLTDRVSGLTDRVSAGVG 184
M+ RGY L KDA+ +A+AFD+ H + L ++GL++++S T V+
Sbjct: 133 NIMVGRGYALGKDAMEKAKAFDDRHNLISNASATIASLDDKMGLSEKLSIGTTVVNE--- 189
Query: 185 AIRSVDETYHVSEXXXXXXXXXXXXXXXXXNGIMTSSYFSAGA 227
+R +DE Y V E +M + Y S+GA
Sbjct: 190 KLRDIDERYQVREITKSALAAAEETAISARTALMANPYVSSGA 232
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.129 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,051,481
Number of extensions: 142632
Number of successful extensions: 364
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 7
Length of query: 251
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 155
Effective length of database: 8,474,633
Effective search space: 1313568115
Effective search space used: 1313568115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)