BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0579900 Os05g0579900|AK063417
(708 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0579900 Heat shock protein DnaJ, N-terminal domain con... 793 0.0
Os01g0634300 Heat shock protein DnaJ, N-terminal domain con... 313 3e-85
Os01g0355500 TolA family protein 224 1e-58
Os12g0548200 Heat shock protein DnaJ, N-terminal domain con... 217 2e-56
Os03g0198300 Heat shock protein DnaJ, N-terminal domain con... 147 3e-35
>Os05g0579900 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 708
Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/388 (100%), Positives = 388/388 (100%)
Query: 1 LQESSEVTSIDNSLARQIKSLILEDLEGSSETQAFPGDPGTAGSEAETYGRNLGTTGLET 60
LQESSEVTSIDNSLARQIKSLILEDLEGSSETQAFPGDPGTAGSEAETYGRNLGTTGLET
Sbjct: 1 LQESSEVTSIDNSLARQIKSLILEDLEGSSETQAFPGDPGTAGSEAETYGRNLGTTGLET 60
Query: 61 ESYGREKFSFVEESFMHNANRNVTESPVETPIPEQVENVEIEDRVGSCAHSEESTVDKDS 120
ESYGREKFSFVEESFMHNANRNVTESPVETPIPEQVENVEIEDRVGSCAHSEESTVDKDS
Sbjct: 61 ESYGREKFSFVEESFMHNANRNVTESPVETPIPEQVENVEIEDRVGSCAHSEESTVDKDS 120
Query: 121 ECPEEGSDITSQNNNLPDHEDSTMLNVFEVASKLIKRDLDQEKQDTLQPGEVETRTVLDS 180
ECPEEGSDITSQNNNLPDHEDSTMLNVFEVASKLIKRDLDQEKQDTLQPGEVETRTVLDS
Sbjct: 121 ECPEEGSDITSQNNNLPDHEDSTMLNVFEVASKLIKRDLDQEKQDTLQPGEVETRTVLDS 180
Query: 181 NDKDTKENPSENSNTIGSEEVLSHGNQEDQKVPEMDKTKGRSDANAQVKLSGVNFYEDGD 240
NDKDTKENPSENSNTIGSEEVLSHGNQEDQKVPEMDKTKGRSDANAQVKLSGVNFYEDGD
Sbjct: 181 NDKDTKENPSENSNTIGSEEVLSHGNQEDQKVPEMDKTKGRSDANAQVKLSGVNFYEDGD 240
Query: 241 VTSAANNVTTRLTTNSKGQASSSSEMLTGRQHLPQDAGPAISQTSNGTFPSLEKTEEVCK 300
VTSAANNVTTRLTTNSKGQASSSSEMLTGRQHLPQDAGPAISQTSNGTFPSLEKTEEVCK
Sbjct: 241 VTSAANNVTTRLTTNSKGQASSSSEMLTGRQHLPQDAGPAISQTSNGTFPSLEKTEEVCK 300
Query: 301 EAGRELPTDKSAAFEDENSRACKSKAELKQQQFHSEKSSSLPKSAEGHIPSSADISRKET 360
EAGRELPTDKSAAFEDENSRACKSKAELKQQQFHSEKSSSLPKSAEGHIPSSADISRKET
Sbjct: 301 EAGRELPTDKSAAFEDENSRACKSKAELKQQQFHSEKSSSLPKSAEGHIPSSADISRKET 360
Query: 361 PGVQRLKEQGSLRTEREREKDKEASRRL 388
PGVQRLKEQGSLRTEREREKDKEASRRL
Sbjct: 361 PGVQRLKEQGSLRTEREREKDKEASRRL 388
Score = 374 bits (959), Expect = e-103, Method: Compositional matrix adjust.
Identities = 173/173 (100%), Positives = 173/173 (100%)
Query: 536 NLDNRQDTQFQRAVSSNLMRNPDSYSKGLEVESALRHKARLERHQRTAERVTKALAEKNM 595
NLDNRQDTQFQRAVSSNLMRNPDSYSKGLEVESALRHKARLERHQRTAERVTKALAEKNM
Sbjct: 536 NLDNRQDTQFQRAVSSNLMRNPDSYSKGLEVESALRHKARLERHQRTAERVTKALAEKNM 595
Query: 596 RDLLAQREQAEKHRLSEYLDPEIKRWSNGKEGNLRALLSTLQYILGADSGWQPVPLTELI 655
RDLLAQREQAEKHRLSEYLDPEIKRWSNGKEGNLRALLSTLQYILGADSGWQPVPLTELI
Sbjct: 596 RDLLAQREQAEKHRLSEYLDPEIKRWSNGKEGNLRALLSTLQYILGADSGWQPVPLTELI 655
Query: 656 TAAAVKKAYRKATLCVHPDKLQQRGATIRQKYICEKVFDLLKDAWNKFTSEER 708
TAAAVKKAYRKATLCVHPDKLQQRGATIRQKYICEKVFDLLKDAWNKFTSEER
Sbjct: 656 TAAAVKKAYRKATLCVHPDKLQQRGATIRQKYICEKVFDLLKDAWNKFTSEER 708
>Os01g0634300 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 1474
Score = 313 bits (802), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 147/185 (79%), Positives = 165/185 (89%), Gaps = 2/185 (1%)
Query: 526 SSFKESFKSSNLDNRQDTQFQRAVSSNLMRNPDSYSKGL--EVESALRHKARLERHQRTA 583
SSFK+SFKS+N DN+ D QFQ+ S+N R+ DS ++G+ E ESALRHKAR ER RTA
Sbjct: 1290 SSFKDSFKSTNQDNQLDKQFQKTASNNYERSTDSSNQGIVVEFESALRHKARSEREHRTA 1349
Query: 584 ERVTKALAEKNMRDLLAQREQAEKHRLSEYLDPEIKRWSNGKEGNLRALLSTLQYILGAD 643
ER KALAEKNMRD+LAQREQAE+HRL+EYLDPE+KRWSNGKEGNLRALLSTLQYILG+D
Sbjct: 1350 ERAAKALAEKNMRDMLAQREQAERHRLAEYLDPEVKRWSNGKEGNLRALLSTLQYILGSD 1409
Query: 644 SGWQPVPLTELITAAAVKKAYRKATLCVHPDKLQQRGATIRQKYICEKVFDLLKDAWNKF 703
+GWQ VPLT+LITA AVKKAYR+ATLCVHPDKLQQRGATIRQKYICEKVFDLLK+AWNKF
Sbjct: 1410 NGWQSVPLTDLITATAVKKAYRRATLCVHPDKLQQRGATIRQKYICEKVFDLLKEAWNKF 1469
Query: 704 TSEER 708
SEER
Sbjct: 1470 NSEER 1474
>Os01g0355500 TolA family protein
Length = 948
Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 113/172 (65%), Positives = 131/172 (76%), Gaps = 9/172 (5%)
Query: 545 FQRAVSSNLMRN-------PDSYSKGLEV--ESALRHKARLERHQRTAERVTKALAEKNM 595
F + S+NLM + P S + EV ES R KARLERHQRT ER KALAEKN
Sbjct: 775 FAQPPSTNLMDDLSSIFGAPSSSAVFQEVDGESEERRKARLERHQRTMERAAKALAEKNE 834
Query: 596 RDLLAQREQAEKHRLSEYLDPEIKRWSNGKEGNLRALLSTLQYILGADSGWQPVPLTELI 655
RDL Q EQ E+HR+ E LD EIKRW+ GKEGNLRALLSTLQY+L + GW+PV LT+LI
Sbjct: 835 RDLQVQWEQEERHRIGETLDFEIKRWAAGKEGNLRALLSTLQYVLWPECGWRPVSLTDLI 894
Query: 656 TAAAVKKAYRKATLCVHPDKLQQRGATIRQKYICEKVFDLLKDAWNKFTSEE 707
TAA+VKK YRKATLC+HPDK+QQ+GA ++QKYI EKVFDLLK+AWNKF SEE
Sbjct: 895 TAASVKKEYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 946
>Os12g0548200 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 925
Score = 217 bits (553), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 97/129 (75%), Positives = 112/129 (86%)
Query: 579 HQRTAERVTKALAEKNMRDLLAQREQAEKHRLSEYLDPEIKRWSNGKEGNLRALLSTLQY 638
HQRT ER KALAEKN RD+ QREQAE+HR+SE +D EIKRW+ GKEGNLRALLSTLQY
Sbjct: 795 HQRTRERAAKALAEKNERDMQVQREQAERHRISETMDFEIKRWAAGKEGNLRALLSTLQY 854
Query: 639 ILGADSGWQPVPLTELITAAAVKKAYRKATLCVHPDKLQQRGATIRQKYICEKVFDLLKD 698
+L + GWQPV LT+LITAAAVKK YRKATLC+HPDK+QQ+GA ++QKY+ EKVFDLLK+
Sbjct: 855 VLWPECGWQPVSLTDLITAAAVKKVYRKATLCIHPDKVQQKGANLQQKYVAEKVFDLLKE 914
Query: 699 AWNKFTSEE 707
AWNKF SEE
Sbjct: 915 AWNKFNSEE 923
>Os03g0198300 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 607
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 64/108 (59%), Positives = 85/108 (78%), Gaps = 3/108 (2%)
Query: 598 LLAQREQAEKHRLSEYLDPEIKRWSNGKEGNLRALLSTLQYILGADSGWQPVPLTELITA 657
+L E+ E+ ++SE +I WS GKEGN+R+LLSTLQY+L +SGW+PVPL ++I
Sbjct: 499 ILRNNEEKEQIKISE---SKIWEWSKGKEGNIRSLLSTLQYVLWPESGWKPVPLVDIIEG 555
Query: 658 AAVKKAYRKATLCVHPDKLQQRGATIRQKYICEKVFDLLKDAWNKFTS 705
AAVKKAY+KA LC+HPDKLQQRGA + QKYI EKVFD+L++AW +F +
Sbjct: 556 AAVKKAYQKALLCLHPDKLQQRGAAMHQKYIAEKVFDILQEAWKEFNT 603
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.306 0.123 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,247,433
Number of extensions: 747369
Number of successful extensions: 2134
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2129
Number of HSP's successfully gapped: 7
Length of query: 708
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 600
Effective length of database: 11,396,689
Effective search space: 6838013400
Effective search space used: 6838013400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 160 (66.2 bits)