Os12g0548200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Heat shock protein DnaJ, N-terminal domain containing protein.
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Os12g0548200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Heat shock protein DnaJ, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.97 | 0.205 | 12 | 1.13 | 0.41 | -0.93 | -0.194 | 0.89 | 0.508 | 4.68 | 20.04 | 11 | -- | -- |
| 19.5 | 0.207 | 12 | 1 | 0.428 | -0.999 | -0.4 | -- | 0.465 | 4.68 | 16.65 | 25 | -- | -- |
| 19.05 | 0.203 | 12 | 1.14 | 0.418 | -0.914 | -- | 0.953 | 0.507 | 4.56 | 19.66 | 14 | -- | -- |
| 19.76 | 0.207 | 12 | 1.01 | 0.424 | -1.06 | -- | -- | 0.467 | 4.44 | 15.19 | 24 | -- | -- |
| 24.9 | 0.232 | 12 | 1.31 | -- | -1.25 | -- | 1.4 | 0.593 | -- | 20.6 | 88 | -- | -- |
| 30.96 | 0.261 | 12.1 | 0.795 | 0.711 | -- | -0.122 | -- | 0.312 | 3.64 | -- | -- | -- | -- |
| 31.01 | 0.261 | 12.1 | 0.797 | 0.71 | -- | -- | -- | 0.313 | 3.63 | -- | -- | -- | -- |
| 26.4 | 0.239 | 12 | 1.11 | -- | -1.38 | -- | -- | 0.532 | -- | 16.19 | 89 | -- | -- |
| 43.97 | 0.311 | 12.1 | -- | 0.571 | -0.579 | -- | -- | 0.295 | 4.01 | 15.19 | 24 | -- | -- |
| 59.03 | 0.359 | 12.1 | 0.827 | -- | -- | -- | -- | 0.332 | -- | -- | -- | -- | -- |
| 47.76 | 0.323 | 12.1 | -- | 0.726 | -- | -- | -- | 0.224 | 3.62 | -- | -- | -- | -- |
| 54.9 | 0.345 | 12.1 | -- | -- | -0.902 | -- | -- | 0.343 | -- | 23.2 | 86 | -- | -- |
| 77.07 | 0.41 | 12.1 | -- | -- | -- | -- | -- | 0.24 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 5 | 18.61 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 7 | 18.82 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 12 | 18.98 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 20 | 19.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 21 | 19.08 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 25 | 19.14 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 28 | 19.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 30 | 19.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 31 | 19.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 34 | 19.23 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 37 | 19.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 39 | 19.39 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 42 | 19.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 46 | 19.45 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 51 | 19.50 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 60 | 19.56 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 72 | 19.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 84 | 19.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 110 | 19.94 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 114 | 19.97 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 115 | 20.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 128 | 20.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 159 | 20.23 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 165 | 20.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 187 | 20.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 189 | 20.37 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 217 | 20.48 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 222 | 20.51 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 223 | 20.51 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 227 | 20.52 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 233 | 20.54 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 236 | 20.55 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 237 | 20.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 242 | 20.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 249 | 20.59 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 6 |
| 253 | 20.59 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 265 | 20.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 297 | 20.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 300 | 20.67 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 346 | 20.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 349 | 20.74 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 383 | 20.79 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 462 | 20.88 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 11 |
| 512 | 20.93 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 8 |
| 548 | 20.96 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 10 |
| 605 | 21.01 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 7 |
| 607 | 21.01 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 16 |
| 620 | 21.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 17 |
| 629 | 21.03 | wind | 5 | 43200 | > th | dose dependent | sin | 16 | NA |
| 674 | 21.06 | wind | 5 | 43200 | > th | dose independent | sin | 16 | NA |
| 675 | 21.06 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 678 | 21.06 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 692 | 21.07 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 700 | 21.07 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 716 | 21.08 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 718 | 21.08 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 723 | 21.08 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 735 | 21.09 | radiation | 1 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 763 | 21.10 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 784 | 21.11 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 12 |
| 786 | 21.11 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 17 |
| 789 | 21.11 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 11 |
| 829 | 21.14 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 835 | 21.14 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 16 |
| 860 | 21.15 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 17 |
| 873 | 21.15 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 880 | 21.16 | wind | 5 | 43200 | < th | dose independent | sin | 16 | NA |
| 889 | 21.16 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 19 |
| 896 | 21.16 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 15 |
| 916 | 21.17 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 17 |
| 920 | 21.17 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 20 |
| 934 | 21.18 | radiation | 1 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 943 | 21.18 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 18 |
| 975 | 21.19 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 13 |