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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0634300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heat shock protein DnaJ, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.63 (0.0384) R2 : 0.286
β1 : 1.08 (0.149) R2dD : 0.1 R2D : -0.0914
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.15 (0.171) R2dE : 0.312 R2E : 0.0436
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.763 (0.0866) R2dN8 : 0.189 R2N8 : -0.0231
σ : 0.706
deviance : 229.72
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 13.7
memory length : 1429
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
214.89 0.689 4.57 1.65 0.517 -2.49 0.0312 2.84 0.916 23.2 14.64 963 -- --
222.09 0.694 4.65 1.18 0.402 -2.26 0.381 -- 0.8 0.563 14.9 1113 -- --
214.87 0.683 4.57 1.66 0.51 -2.47 -- 2.89 0.922 23.2 14.5 979 -- --
221.85 0.694 4.65 1.08 0.573 -2.53 -- -- 0.767 22.4 13.58 874 -- --
222.55 0.695 4.55 1.72 -- -2.19 -- 3 0.929 -- 13.44 1311 -- --
308.16 0.823 4.72 0.408 0.0852 -- 0.43 -- 0.366 1.37 -- -- -- --
308.88 0.823 4.72 0.394 0.0867 -- -- -- 0.364 0.329 -- -- -- --
229.72 0.706 4.63 1.08 -- -2.15 -- -- 0.763 -- 13.7 1429 -- --
248.54 0.734 4.69 -- 0.49 -2.05 -- -- 0.583 22.4 12.91 859 -- --
309.36 0.822 4.72 0.397 -- -- -- -- 0.365 -- -- -- -- --
312.98 0.828 4.73 -- 0.0925 -- -- -- 0.32 0.552 -- -- -- --
256.34 0.746 4.68 -- -- -1.71 -- -- 0.573 -- 13.93 1289 -- --
313.51 0.826 4.73 -- -- -- -- -- 0.321 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 213.84 temperature 10 720 > th dose dependent rect. 13 23
2 214.05 temperature 10 720 > th dose dependent rect. 24 22
5 214.30 temperature 30 1440 < th dose dependent rect. 13 6
8 214.48 temperature 30 1440 < th dose dependent rect. 14 4
9 214.56 temperature 15 1440 > th dose dependent rect. 15 1
13 214.62 temperature 30 1440 < th dose dependent rect. 11 8
14 214.63 temperature 30 1440 < th dose dependent rect. 9 10
38 215.22 temperature 10 1440 > th dose dependent rect. 11 5
42 215.38 temperature 10 720 > th dose dependent rect. 8 23
48 215.52 temperature 30 1440 < th dose dependent sin 21 NA
57 215.70 temperature 30 1440 < th dose dependent rect. 15 1
80 216.00 temperature 10 720 > th dose dependent rect. 4 23
167 216.77 temperature 15 720 > th dose dependent no NA NA
181 216.84 temperature 10 1440 > th dose dependent sin 21 NA
190 216.89 temperature 30 720 < th dose dependent rect. 2 22
237 217.16 temperature 10 1440 > th dose dependent rect. 11 14
320 217.57 temperature 15 720 > th dose dependent rect. 18 23
343 217.68 temperature 30 720 < th dose dependent rect. 11 23
386 217.89 temperature 15 720 > th dose dependent rect. 2 23
395 217.93 temperature 30 720 < th dose dependent rect. 20 23
538 218.68 temperature 30 720 < th dose dependent no NA NA
583 218.89 temperature 30 720 < th dose dependent rect. 22 23
654 219.15 temperature 30 720 < th dose dependent rect. 6 23