BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0634300 Os01g0634300|Os01g0634300
(1474 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G36520.1 | chr4:17230589-17235435 REVERSE LENGTH=1423 245 1e-64
AT1G75310.1 | chr1:28261004-28266124 FORWARD LENGTH=1449 221 3e-57
AT4G12780.1 | chr4:7512200-7516655 FORWARD LENGTH=905 203 6e-52
AT4G12770.1 | chr4:7506736-7511408 REVERSE LENGTH=892 202 9e-52
AT1G21660.1 | chr1:7605924-7608835 FORWARD LENGTH=524 186 7e-47
AT1G75100.1 | chr1:28191108-28193769 REVERSE LENGTH=652 135 1e-31
AT1G30280.1 | chr1:10662851-10664570 REVERSE LENGTH=456 102 2e-21
>AT4G36520.1 | chr4:17230589-17235435 REVERSE LENGTH=1423
Length = 1422
Score = 245 bits (625), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/169 (70%), Positives = 137/169 (81%), Gaps = 4/169 (2%)
Query: 1306 DKQFQKTASNNYERSTDSSNQGIVVEFESALRHKARSEREHRTAERAAKALAEKNMRDML 1365
DKQFQ + S R DS E ES R+ +R ER RTA+R AKALAEKNMRD++
Sbjct: 1258 DKQFQNSVSFGASRYQDSHG----TEGESPQRYTSRLERHQRTADRVAKALAEKNMRDLV 1313
Query: 1366 AQREQAERHRLAEYLDPEVKRWSNGKEGNLRALLSTLQYILGSDNGWQSVPLTDLITATA 1425
AQREQAER R+AE LD EVKRWS+GKEGN+RALLSTLQYILG ++GWQ +PLT++IT+ A
Sbjct: 1314 AQREQAERIRIAETLDTEVKRWSSGKEGNIRALLSTLQYILGPESGWQPLPLTEVITSAA 1373
Query: 1426 VKKAYRRATLCVHPDKLQQRGATIRQKYICEKVFDLLKEAWNKFNSEER 1474
VK+AYR+ATLCVHPDKLQQRGA I QKYICEKVFDLLKEAWN+FNSE R
Sbjct: 1374 VKRAYRKATLCVHPDKLQQRGANIHQKYICEKVFDLLKEAWNRFNSEGR 1422
>AT1G75310.1 | chr1:28261004-28266124 FORWARD LENGTH=1449
Length = 1448
Score = 221 bits (563), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 103/154 (66%), Positives = 130/154 (84%), Gaps = 4/154 (2%)
Query: 1321 TDSSNQGIVVEFESALRHKARSEREHRTAERAAKALAEKNMRDMLAQREQAERHRLAEYL 1380
++SSNQ E R KARSER RT++RAA+ALAEK +RD+ Q+EQ ER+RLAE L
Sbjct: 1299 SNSSNQT----GEPIQRCKARSERHQRTSDRAAEALAEKKLRDLKTQKEQTERNRLAEAL 1354
Query: 1381 DPEVKRWSNGKEGNLRALLSTLQYILGSDNGWQSVPLTDLITATAVKKAYRRATLCVHPD 1440
D +VKRWS+GKE NLRAL+STLQYILG+++GW+ +PLTDL+++ +V+KAYR+ATL VHPD
Sbjct: 1355 DADVKRWSSGKENNLRALISTLQYILGAESGWKPIPLTDLVSSASVRKAYRKATLYVHPD 1414
Query: 1441 KLQQRGATIRQKYICEKVFDLLKEAWNKFNSEER 1474
KLQQRGA+ +QKYICEKVFDLLKEAWNKF ++ER
Sbjct: 1415 KLQQRGASTQQKYICEKVFDLLKEAWNKFGADER 1448
>AT4G12780.1 | chr4:7512200-7516655 FORWARD LENGTH=905
Length = 904
Score = 203 bits (516), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 106/128 (82%)
Query: 1346 HRTAERAAKALAEKNMRDMLAQREQAERHRLAEYLDPEVKRWSNGKEGNLRALLSTLQYI 1405
RT ERAAKALAEKN RD+ QREQ E+ R+ LD E+KRW GKEGNLRALLSTLQY+
Sbjct: 775 QRTQERAAKALAEKNERDLQVQREQVEKDRIGVTLDVEIKRWGAGKEGNLRALLSTLQYV 834
Query: 1406 LGSDNGWQSVPLTDLITATAVKKAYRRATLCVHPDKLQQRGATIRQKYICEKVFDLLKEA 1465
L + GWQ V LTDLITA +VKK YR+ATLC+HPDK+QQ+GA ++QKYI EKVFD+LKEA
Sbjct: 835 LWPECGWQPVSLTDLITAASVKKVYRKATLCIHPDKVQQKGANLQQKYIAEKVFDMLKEA 894
Query: 1466 WNKFNSEE 1473
WNKFNSEE
Sbjct: 895 WNKFNSEE 902
>AT4G12770.1 | chr4:7506736-7511408 REVERSE LENGTH=892
Length = 891
Score = 202 bits (515), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 106/128 (82%)
Query: 1346 HRTAERAAKALAEKNMRDMLAQREQAERHRLAEYLDPEVKRWSNGKEGNLRALLSTLQYI 1405
RT ERAAKALAEKN RD+ QREQAE+ R+ LD E++RW GKEGNLRALLSTLQY+
Sbjct: 762 QRTQERAAKALAEKNERDLQVQREQAEKDRIGGTLDVEIRRWGAGKEGNLRALLSTLQYV 821
Query: 1406 LGSDNGWQSVPLTDLITATAVKKAYRRATLCVHPDKLQQRGATIRQKYICEKVFDLLKEA 1465
L + GWQ V LTDLIT +VKK YR+ATLC+HPDK+QQ+GA ++QKYI EKVFD+LKEA
Sbjct: 822 LWPECGWQPVSLTDLITGASVKKVYRKATLCIHPDKVQQKGANLQQKYIAEKVFDMLKEA 881
Query: 1466 WNKFNSEE 1473
WNKFNSEE
Sbjct: 882 WNKFNSEE 889
>AT1G21660.1 | chr1:7605924-7608835 FORWARD LENGTH=524
Length = 523
Score = 186 bits (473), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 85/141 (60%), Positives = 111/141 (78%)
Query: 1333 ESALRHKARSEREHRTAERAAKALAEKNMRDMLAQREQAERHRLAEYLDPEVKRWSNGKE 1392
ES R KAR +RE RT R A+A+A+ N RD ++ EQ +R R++E +D E++RW+ GKE
Sbjct: 381 ESEERRKARWDREQRTKSRVAQAVADMNNRDHQSRIEQEQRTRISETVDTEIRRWATGKE 440
Query: 1393 GNLRALLSTLQYILGSDNGWQSVPLTDLITATAVKKAYRRATLCVHPDKLQQRGATIRQK 1452
GN+RALLS+L +L GW++V +TDLIT++AVKK YR+ATL VHPDK+QQ+GAT+ QK
Sbjct: 441 GNMRALLSSLHIVLWPGCGWEAVSITDLITSSAVKKVYRKATLYVHPDKVQQKGATLEQK 500
Query: 1453 YICEKVFDLLKEAWNKFNSEE 1473
YI EKVFD+LKEAWNKFN EE
Sbjct: 501 YIAEKVFDILKEAWNKFNKEE 521
>AT1G75100.1 | chr1:28191108-28193769 REVERSE LENGTH=652
Length = 651
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 55/92 (59%), Positives = 77/92 (83%)
Query: 1380 LDPEVKRWSNGKEGNLRALLSTLQYILGSDNGWQSVPLTDLITATAVKKAYRRATLCVHP 1439
+D ++++WS+GK GN+R+LLSTLQYIL S +GW+ VPL D+I AV+K+Y+RA L +HP
Sbjct: 556 IDAKIRKWSSGKSGNIRSLLSTLQYILWSGSGWKPVPLMDMIEGNAVRKSYQRALLILHP 615
Query: 1440 DKLQQRGATIRQKYICEKVFDLLKEAWNKFNS 1471
DKLQQ+GA+ QKY+ EKVF+LL+EAW+ FN+
Sbjct: 616 DKLQQKGASANQKYMAEKVFELLQEAWDHFNT 647
>AT1G30280.1 | chr1:10662851-10664570 REVERSE LENGTH=456
Length = 455
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Query: 1384 VKRWSNGKEGNLRALLSTLQYILGSDNGWQSVPLTDLITATAVKKAYRRATLCVHPDKLQ 1443
++ W GKE N+R LLSTL ++L S++ W S+PL +L + VKKAY+RA LC+HPDKLQ
Sbjct: 361 IRIWLTGKETNIRLLLSTLHHVLWSNSNWDSIPLANLRDGSQVKKAYQRARLCLHPDKLQ 420
Query: 1444 QRGATIR-QKYICEKVFDLLKEAWNKFNSEE 1473
QRG T QK + +VF +L+EAW + + E
Sbjct: 421 QRGGTSPIQKSVASRVFAILQEAWAVYVTNE 451
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.309 0.127 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 28,536,563
Number of extensions: 1220439
Number of successful extensions: 3370
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3358
Number of HSP's successfully gapped: 8
Length of query: 1474
Length of database: 11,106,569
Length adjustment: 111
Effective length of query: 1363
Effective length of database: 8,063,393
Effective search space: 10990404659
Effective search space used: 10990404659
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 118 (50.1 bits)