Os01g0355500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TolA family protein.
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Os01g0355500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TolA family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.8 | 0.193 | 9.72 | 0.725 | 0.229 | -0.493 | -0.466 | -0.224 | 0.113 | 12.3 | 80 | 1367 | -- | -- |
| 16.85 | 0.191 | 9.72 | 0.738 | 0.232 | -0.495 | -0.467 | -- | 0.114 | 12.2 | 79.49 | 1363 | -- | -- |
| 17.7 | 0.196 | 9.72 | 0.711 | 0.234 | -0.48 | -- | -0.143 | 0.109 | 12.6 | 80 | 1363 | -- | -- |
| 17.72 | 0.196 | 9.72 | 0.725 | 0.233 | -0.48 | -- | -- | 0.112 | 12.7 | 79.99 | 1363 | -- | -- |
| 19.3 | 0.205 | 9.74 | 0.745 | -- | -0.541 | -- | 0.147 | 0.0968 | -- | 78.9 | 1111 | -- | -- |
| 19.99 | 0.21 | 9.73 | 0.724 | 0.254 | -- | -0.399 | -- | 0.0872 | 12.6 | -- | -- | -- | -- |
| 20.63 | 0.213 | 9.73 | 0.71 | 0.257 | -- | -- | -- | 0.0857 | 13 | -- | -- | -- | -- |
| 19.29 | 0.205 | 9.73 | 0.736 | -- | -0.546 | -- | -- | 0.108 | -- | 79 | 1117 | -- | -- |
| 30.35 | 0.257 | 9.74 | -- | 0.183 | -0.459 | -- | -- | 0.0895 | 13.5 | 84.04 | 2388 | -- | -- |
| 24.75 | 0.232 | 9.73 | 0.7 | -- | -- | -- | -- | 0.0807 | -- | -- | -- | -- | -- |
| 33.92 | 0.272 | 9.75 | -- | 0.246 | -- | -- | -- | 0.00664 | 12.9 | -- | -- | -- | -- |
| 31.02 | 0.259 | 9.74 | -- | -- | -0.535 | -- | -- | 0.0728 | -- | 86.02 | 1087 | -- | -- |
| 37.68 | 0.287 | 9.75 | -- | -- | -- | -- | -- | 0.003 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.48 | humidity | 80 | 1440 | < th | dose independent | rect. | 21 | 18 |
| 3 | 16.53 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 16 |
| 4 | 16.53 | humidity | 80 | 1440 | > th | dose independent | rect. | 21 | 19 |
| 5 | 16.54 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 17 |
| 21 | 16.61 | humidity | 70 | 1440 | > th | dose dependent | rect. | 1 | 15 |
| 65 | 16.74 | humidity | 80 | 1440 | < th | dose independent | sin | 5 | NA |
| 75 | 16.76 | humidity | 80 | 1440 | > th | dose independent | sin | 4 | NA |
| 88 | 16.78 | humidity | 70 | 1440 | > th | dose dependent | sin | 4 | NA |
| 250 | 16.97 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 254 | 16.97 | humidity | 70 | 1440 | > th | dose dependent | no | NA | NA |
| 276 | 16.98 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 284 | 16.99 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 287 | 16.99 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 292 | 16.99 | humidity | 70 | 1440 | > th | dose dependent | rect. | 7 | 23 |
| 300 | 17.00 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 302 | 17.00 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 334 | 17.02 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 353 | 17.03 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 373 | 17.04 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 397 | 17.05 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 400 | 17.05 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 506 | 17.10 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 668 | 17.17 | humidity | 90 | 1440 | < th | dose dependent | sin | 9 | NA |
| 808 | 17.22 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 13 |
| 844 | 17.23 | humidity | 80 | 720 | < th | dose dependent | rect. | 19 | 8 |