BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0355500 Os01g0355500|AK100317
(948 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G12770.1 | chr4:7506736-7511408 REVERSE LENGTH=892 304 1e-82
AT4G12780.1 | chr4:7512200-7516655 FORWARD LENGTH=905 302 5e-82
AT1G21660.1 | chr1:7605924-7608835 FORWARD LENGTH=524 258 1e-68
AT4G36520.1 | chr4:17230589-17235435 REVERSE LENGTH=1423 224 1e-58
AT1G75310.1 | chr1:28261004-28266124 FORWARD LENGTH=1449 207 2e-53
AT1G75100.1 | chr1:28191108-28193769 REVERSE LENGTH=652 132 6e-31
AT1G30280.1 | chr1:10662851-10664570 REVERSE LENGTH=456 94 3e-19
>AT4G12770.1 | chr4:7506736-7511408 REVERSE LENGTH=892
Length = 891
Score = 304 bits (779), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 169/228 (74%), Positives = 184/228 (80%), Gaps = 5/228 (2%)
Query: 726 DLDSFFGMPSRSSSVPRSQTATTNPFDVQPQGGSDFGSIRRTSSGSASPFAQ----PPST 781
DLDSFF SR SSVPR +T +PF G F S R +S + P +T
Sbjct: 664 DLDSFFNSVSRPSSVPRQRTNPPDPFQDSWNKGGSFESSRPSSRVPSGPTENLRKASSAT 723
Query: 782 NLMDDLSSIFGAPSS-SAVFQEVDGESEERRKARLERHQRTMERAAKALAEKNERDLQVQ 840
N++DDLSSIFGAP+S S FQ+VDGE+EERR+ARLERHQRT ERAAKALAEKNERDLQVQ
Sbjct: 724 NIVDDLSSIFGAPASQSGGFQDVDGETEERRRARLERHQRTQERAAKALAEKNERDLQVQ 783
Query: 841 WEQEERHRIGETLDFEIKRWAAGKEGNLRALLSTLQYVLWPECGWRPVSLTDLITAASVK 900
EQ E+ RIG TLD EI+RW AGKEGNLRALLSTLQYVLWPECGW+PVSLTDLIT ASVK
Sbjct: 784 REQAEKDRIGGTLDVEIRRWGAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITGASVK 843
Query: 901 KEYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEELF 948
K YRKATLCIHPDKVQQKGANLQQKYIAEKVFD+LKEAWNKFNSEELF
Sbjct: 844 KVYRKATLCIHPDKVQQKGANLQQKYIAEKVFDMLKEAWNKFNSEELF 891
>AT4G12780.1 | chr4:7512200-7516655 FORWARD LENGTH=905
Length = 904
Score = 302 bits (774), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 169/228 (74%), Positives = 182/228 (79%), Gaps = 5/228 (2%)
Query: 726 DLDSFFGMPSRSSSVPRSQTATTNPFDVQPQGGSDFGSIR---RTSSGSASPFAQPPS-T 781
DLDSFF SR +S PR +T +PF G F S R R G + S T
Sbjct: 677 DLDSFFSSISRPNSAPRQRTNPLDPFQDSWNKGGSFESSRESLRVPPGQPENLRKTSSVT 736
Query: 782 NLMDDLSSIFGAPSS-SAVFQEVDGESEERRKARLERHQRTMERAAKALAEKNERDLQVQ 840
N++DDLSSIFGA +S S FQ+VDGE+EERR+ARLERHQRT ERAAKALAEKNERDLQVQ
Sbjct: 737 NIVDDLSSIFGASASQSGGFQDVDGETEERRRARLERHQRTQERAAKALAEKNERDLQVQ 796
Query: 841 WEQEERHRIGETLDFEIKRWAAGKEGNLRALLSTLQYVLWPECGWRPVSLTDLITAASVK 900
EQ E+ RIG TLD EIKRW AGKEGNLRALLSTLQYVLWPECGW+PVSLTDLITAASVK
Sbjct: 797 REQVEKDRIGVTLDVEIKRWGAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITAASVK 856
Query: 901 KEYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEELF 948
K YRKATLCIHPDKVQQKGANLQQKYIAEKVFD+LKEAWNKFNSEELF
Sbjct: 857 KVYRKATLCIHPDKVQQKGANLQQKYIAEKVFDMLKEAWNKFNSEELF 904
>AT1G21660.1 | chr1:7605924-7608835 FORWARD LENGTH=524
Length = 523
Score = 258 bits (659), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 131/222 (59%), Positives = 164/222 (73%), Gaps = 8/222 (3%)
Query: 726 DLDSFFGMPSRSSSVPRSQTATTNPFDVQPQGGSDFGSIRRTSSGSASPFAQPPSTNLMD 785
DLDSFF +RSSSVP+S+T T + Q + + ++T +G ++ P NL+D
Sbjct: 309 DLDSFFS--ARSSSVPKSRTTTET---TRKQASN---APKKTPNGVSNAKKPPAPANLVD 360
Query: 786 DLSSIFGAPSSSAVFQEVDGESEERRKARLERHQRTMERAAKALAEKNERDLQVQWEQEE 845
D S++FG F+E+ GESEERRKAR +R QRT R A+A+A+ N RD Q + EQE+
Sbjct: 361 DFSALFGEDPIFRQFEEIPGESEERRKARWDREQRTKSRVAQAVADMNNRDHQSRIEQEQ 420
Query: 846 RHRIGETLDFEIKRWAAGKEGNLRALLSTLQYVLWPECGWRPVSLTDLITAASVKKEYRK 905
R RI ET+D EI+RWA GKEGN+RALLS+L VLWP CGW VS+TDLIT+++VKK YRK
Sbjct: 421 RTRISETVDTEIRRWATGKEGNMRALLSSLHIVLWPGCGWEAVSITDLITSSAVKKVYRK 480
Query: 906 ATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEEL 947
ATL +HPDKVQQKGA L+QKYIAEKVFD+LKEAWNKFN EEL
Sbjct: 481 ATLYVHPDKVQQKGATLEQKYIAEKVFDILKEAWNKFNKEEL 522
>AT4G36520.1 | chr4:17230589-17235435 REVERSE LENGTH=1423
Length = 1422
Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 118/216 (54%), Positives = 151/216 (69%), Gaps = 13/216 (6%)
Query: 736 RSSSVPRSQTATTNPFDVQPQGGSDFGSIRRTSSGSASPFAQPPSTNLMDDL---SSIFG 792
R++S R + A F+ + + + SSG F + +L D S FG
Sbjct: 1212 RATSEARDRAAEKAAFEARERMERSVSDKQSQSSGF---FGERMEISLSDKQFQNSVSFG 1268
Query: 793 APSSSAVFQE---VDGESEERRKARLERHQRTMERAAKALAEKNERDLQVQWEQEERHRI 849
A + +Q+ +GES +R +RLERHQRT +R AKALAEKN RDL Q EQ ER RI
Sbjct: 1269 A----SRYQDSHGTEGESPQRYTSRLERHQRTADRVAKALAEKNMRDLVAQREQAERIRI 1324
Query: 850 GETLDFEIKRWAAGKEGNLRALLSTLQYVLWPECGWRPVSLTDLITAASVKKEYRKATLC 909
ETLD E+KRW++GKEGN+RALLSTLQY+L PE GW+P+ LT++IT+A+VK+ YRKATLC
Sbjct: 1325 AETLDTEVKRWSSGKEGNIRALLSTLQYILGPESGWQPLPLTEVITSAAVKRAYRKATLC 1384
Query: 910 IHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 945
+HPDK+QQ+GAN+ QKYI EKVFDLLKEAWN+FNSE
Sbjct: 1385 VHPDKLQQRGANIHQKYICEKVFDLLKEAWNRFNSE 1420
>AT1G75310.1 | chr1:28261004-28266124 FORWARD LENGTH=1449
Length = 1448
Score = 207 bits (527), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 95/142 (66%), Positives = 119/142 (83%)
Query: 805 GESEERRKARLERHQRTMERAAKALAEKNERDLQVQWEQEERHRIGETLDFEIKRWAAGK 864
GE +R KAR ERHQRT +RAA+ALAEK RDL+ Q EQ ER+R+ E LD ++KRW++GK
Sbjct: 1306 GEPIQRCKARSERHQRTSDRAAEALAEKKLRDLKTQKEQTERNRLAEALDADVKRWSSGK 1365
Query: 865 EGNLRALLSTLQYVLWPECGWRPVSLTDLITAASVKKEYRKATLCIHPDKVQQKGANLQQ 924
E NLRAL+STLQY+L E GW+P+ LTDL+++ASV+K YRKATL +HPDK+QQ+GA+ QQ
Sbjct: 1366 ENNLRALISTLQYILGAESGWKPIPLTDLVSSASVRKAYRKATLYVHPDKLQQRGASTQQ 1425
Query: 925 KYIAEKVFDLLKEAWNKFNSEE 946
KYI EKVFDLLKEAWNKF ++E
Sbjct: 1426 KYICEKVFDLLKEAWNKFGADE 1447
>AT1G75100.1 | chr1:28191108-28193769 REVERSE LENGTH=652
Length = 651
Score = 132 bits (333), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 76/92 (82%)
Query: 853 LDFEIKRWAAGKEGNLRALLSTLQYVLWPECGWRPVSLTDLITAASVKKEYRKATLCIHP 912
+D +I++W++GK GN+R+LLSTLQY+LW GW+PV L D+I +V+K Y++A L +HP
Sbjct: 556 IDAKIRKWSSGKSGNIRSLLSTLQYILWSGSGWKPVPLMDMIEGNAVRKSYQRALLILHP 615
Query: 913 DKVQQKGANLQQKYIAEKVFDLLKEAWNKFNS 944
DK+QQKGA+ QKY+AEKVF+LL+EAW+ FN+
Sbjct: 616 DKLQQKGASANQKYMAEKVFELLQEAWDHFNT 647
>AT1G30280.1 | chr1:10662851-10664570 REVERSE LENGTH=456
Length = 455
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 857 IKRWAAGKEGNLRALLSTLQYVLWPECGWRPVSLTDLITAASVKKEYRKATLCIHPDKVQ 916
I+ W GKE N+R LLSTL +VLW W + L +L + VKK Y++A LC+HPDK+Q
Sbjct: 361 IRIWLTGKETNIRLLLSTLHHVLWSNSNWDSIPLANLRDGSQVKKAYQRARLCLHPDKLQ 420
Query: 917 QKGANLQ-QKYIAEKVFDLLKEAWNKFNSEE 946
Q+G QK +A +VF +L+EAW + + E
Sbjct: 421 QRGGTSPIQKSVASRVFAILQEAWAVYVTNE 451
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.128 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,741,827
Number of extensions: 578081
Number of successful extensions: 1783
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1777
Number of HSP's successfully gapped: 7
Length of query: 948
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 840
Effective length of database: 8,145,641
Effective search space: 6842338440
Effective search space used: 6842338440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 116 (49.3 bits)