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Os03g0198300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heat shock protein DnaJ, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.4 (0.0127) R2 : 0.93
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.07 (0.0358) R2dC : 0.614 R2C : 0.815
β3 : -1.15 (0.045) R2dE : 0.116 R2E : 0.312
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0599 (0.0269) R2dN8 : 0.00137 R2N8 : -0.00453
σ : 0.238
deviance : 26.19
__
_____
C
peak time of C : 7.1
E
wheather : radiation
threshold : 0.04
memory length : 213
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 7.1
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.51 0.242 13.4 -0.129 2.11 -1.1 0.13 0.318 0.0524 7.13 0.09931 247 7.02 --
26.24 0.239 13.4 -0.18 2.11 -1.09 0.0539 -- 0.0171 7.03 0.04006 234 7.09 --
25.93 0.237 13.4 -0.148 2.05 -1.17 -- 0.361 0.0402 7.09 0.04142 228 7.13 --
25.75 0.236 13.4 -0.116 2.06 -1.15 -- -- 0.062 7.13 0.04998 219 7.09 --
78.09 0.412 13.6 -0.613 -- -2.22 -- -0.274 -0.194 -- 0.68 480 10 --
57.57 0.356 13.4 -0.253 2.46 -- 0.429 -- -0.0464 6.77 -- -- -- --
58.04 0.357 13.4 -0.246 2.46 -- -- -- -0.0476 6.77 -- -- -- --
55.36 0.347 13.6 -0.238 -- -2.57 -- -- -0.121 -- 0.1497 472 11.7 --
26.19 0.238 13.4 -- 2.07 -1.15 -- -- 0.0599 7.1 0.04 213 7.1 --
375.45 0.905 13.5 -0.191 -- -- -- -- 0.000489 -- -- -- -- --
59.63 0.361 13.4 -- 2.46 -- -- -- -0.0202 6.78 -- -- -- --
44.86 0.312 13.4 -- -- -2.84 -- -- 0.0414 -- 0.06377 456 11.1 --
376.41 0.906 13.5 -- -- -- -- -- 0.0216 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 26.66 atmosphere 995.0 270 > th dose independent rect. 14 18
2 26.96 radiation 40.0 270 < th dose independent rect. 14 18
3 27.23 wind 9.0 270 < th dose independent rect. 8 6
4 27.23 radiation 1.0 270 > th dose independent rect. 8 6
5 27.32 temperature 10.0 270 > th dose independent rect. 8 6
6 27.32 atmosphere 995.0 270 > th dose independent rect. 8 6
7 27.32 atmosphere 1015.0 270 < th dose independent rect. 8 6
8 27.32 temperature 10.0 270 > th dose independent rect. 14 18
9 27.35 precipitation 0.1 270 < th dose independent rect. 8 6
10 27.35 precipitation 0.1 270 < th dose dependent rect. 8 6
13 27.90 wind 9.0 270 < th dose independent rect. 14 18
14 28.01 precipitation 0.1 270 < th dose independent rect. 14 18
15 28.01 precipitation 0.1 270 < th dose dependent rect. 14 18
16 28.02 radiation 1.0 270 > th dose independent rect. 15 16
18 28.18 wind 1.0 270 > th dose independent rect. 8 6
22 28.51 humidity 50.0 270 > th dose independent rect. 8 6
30 28.58 radiation 1.0 270 < th dose dependent rect. 18 9
32 28.82 radiation 1.0 270 < th dose dependent sin 13 NA
36 29.00 wind 9.0 270 < th dose independent rect. 18 9
42 29.03 atmosphere 995.0 270 > th dose independent rect. 3 15
47 29.05 temperature 10.0 270 > th dose independent rect. 18 9
48 29.05 humidity 50.0 270 > th dose independent rect. 18 9
49 29.05 radiation 20.0 270 < th dose independent rect. 18 9
52 29.05 temperature 10.0 270 > th dose independent rect. 3 15
53 29.05 atmosphere 1015.0 270 < th dose independent rect. 3 15
64 29.38 atmosphere 995.0 10 > th dose independent rect. 16 18
69 29.43 temperature 30.0 270 < th dose independent rect. 19 8
71 29.43 atmosphere 995.0 270 > th dose independent rect. 19 8
88 29.59 atmosphere 995.0 270 > th dose independent rect. 14 5
97 29.72 atmosphere 995.0 270 > th dose independent rect. 13 20
100 29.75 temperature 10.0 270 > th dose dependent rect. 19 8
103 29.86 temperature 10.0 10 > th dose independent rect. 10 6
105 29.86 atmosphere 1015.0 10 < th dose independent rect. 10 6
106 29.86 precipitation 0.1 10 < th dose independent rect. 10 6
107 29.86 temperature 10.0 10 > th dose independent rect. 16 18
108 29.86 precipitation 0.1 10 < th dose dependent rect. 10 6
114 29.91 precipitation 0.1 270 < th dose independent rect. 3 15
115 29.91 precipitation 0.1 270 < th dose dependent rect. 3 15
128 29.95 wind 9.0 10 < th dose independent rect. 10 6
130 29.99 precipitation 0.1 270 < th dose independent rect. 18 9
132 29.99 precipitation 0.1 270 < th dose dependent rect. 18 9
133 30.00 radiation 1.0 270 > th dose independent rect. 9 4
140 30.08 temperature 20.0 270 > th dose independent rect. 14 5
157 30.11 wind 9.0 270 < th dose independent rect. 9 4
158 30.13 wind 9.0 270 < th dose independent rect. 3 15
159 30.14 precipitation 0.1 270 < th dose independent rect. 9 4
160 30.14 precipitation 0.1 270 < th dose dependent rect. 9 4
161 30.15 temperature 10.0 270 > th dose independent rect. 9 4
162 30.15 atmosphere 995.0 270 > th dose independent rect. 9 4
163 30.15 atmosphere 1015.0 270 < th dose independent rect. 9 4
164 30.15 temperature 10.0 270 > th dose independent rect. 13 20
169 30.22 atmosphere 1015.0 270 < th dose independent rect. 19 19
175 30.29 radiation 1.0 10 > th dose independent rect. 10 6
177 30.30 temperature 20.0 270 > th dose independent rect. 15 3
178 30.31 atmosphere 995.0 270 > th dose independent rect. 15 3
179 30.34 radiation 40.0 270 < th dose independent rect. 14 5
181 30.34 wind 9.0 270 < th dose independent rect. 19 19
182 30.38 radiation 1.0 270 > th dose independent sin 13 NA
185 30.39 temperature 10.0 270 > th dose independent rect. 14 5
187 30.39 atmosphere 1010.0 270 < th dose independent rect. 14 5
190 30.39 temperature 10.0 270 > th dose independent rect. 19 19
191 30.39 atmosphere 995.0 270 > th dose independent rect. 19 19
192 30.40 wind 9.0 10 < th dose independent rect. 16 18
197 30.48 wind 1.0 270 > th dose independent rect. 9 4
206 30.53 wind 1.0 270 > th dose independent rect. 14 5
208 30.59 precipitation 0.1 10 < th dose independent rect. 16 18
210 30.59 precipitation 0.1 10 < th dose dependent rect. 16 18
224 30.67 wind 1.0 10 > th dose independent rect. 10 6
227 30.71 radiation 1.0 270 < th dose independent sin 13 NA
228 30.84 humidity 50.0 270 > th dose independent rect. 9 4
231 30.86 wind 9.0 270 < th dose independent rect. 14 5
232 30.87 humidity 50.0 10 > th dose independent rect. 16 18
233 30.88 wind 9.0 270 < th dose independent rect. 13 20
234 30.91 atmosphere 995.0 10 > th dose independent rect. 10 6
236 30.92 radiation 40.0 270 < th dose independent rect. 15 3
237 30.92 precipitation 0.1 270 < th dose independent rect. 14 5
238 30.92 precipitation 0.1 270 < th dose dependent rect. 14 5
243 30.98 precipitation 0.1 270 < th dose independent rect. 19 19
244 30.98 precipitation 0.1 270 < th dose dependent rect. 19 19
250 31.03 wind 9.0 270 < th dose independent rect. 18 21
253 31.05 temperature 10.0 270 > th dose independent rect. 15 3
255 31.05 atmosphere 1010.0 270 < th dose independent rect. 15 3
259 31.05 temperature 10.0 270 > th dose independent rect. 18 21
260 31.06 precipitation 0.1 270 < th dose independent rect. 13 20
261 31.06 precipitation 0.1 270 < th dose dependent rect. 13 20
262 31.08 atmosphere 1015.0 270 < th dose independent rect. 19 8
266 31.14 wind 1.0 270 > th dose independent rect. 15 3
273 31.21 atmosphere 995.0 270 > th dose dependent rect. 14 5
297 31.38 humidity 50.0 270 > th dose independent rect. 19 19
303 31.41 atmosphere 995.0 270 > th dose dependent rect. 15 3
306 31.45 temperature 10.0 1440 > th dose independent rect. 11 6
312 31.45 temperature 10.0 1440 > th dose independent rect. 17 18
326 31.58 precipitation 0.1 270 < th dose independent rect. 15 3
327 31.58 precipitation 0.1 270 < th dose dependent rect. 15 3
328 31.60 wind 9.0 270 < th dose independent rect. 15 3
353 31.71 radiation 40.0 10 < th dose independent rect. 16 18
362 31.85 precipitation 0.1 270 < th dose independent rect. 18 21
363 31.85 precipitation 0.1 270 < th dose dependent rect. 18 21
381 31.96 humidity 90.0 270 < th dose independent rect. 15 2
413 32.20 radiation 1.0 270 > th dose independent rect. 15 2
427 32.27 atmosphere 995.0 270 > th dose independent rect. 18 21
450 32.50 atmosphere 995.0 10 > th dose independent rect. 16 5
459 32.54 wind 1.0 270 > th dose independent rect. 19 8
460 32.54 temperature 10.0 270 > th dose dependent rect. 19 19
472 32.61 humidity 90.0 270 < th dose independent rect. 14 5
487 32.66 temperature 10.0 10 > th dose dependent rect. 10 6
499 32.69 atmosphere 995.0 10 > th dose dependent rect. 16 4
508 32.71 temperature 10.0 270 > th dose dependent rect. 14 5
515 32.75 atmosphere 1015.0 270 < th dose independent rect. 18 21
519 32.76 radiation 40.0 10 < th dose dependent rect. 16 18
522 32.77 atmosphere 1015.0 10 < th dose independent rect. 21 19
525 32.78 radiation 40.0 90 < th dose dependent rect. 15 19
527 32.79 temperature 15.0 10 > th dose independent rect. 21 19
541 32.88 humidity 50.0 270 > th dose independent rect. 20 17
550 32.92 temperature 10.0 270 > th dose dependent rect. 15 3
551 32.95 precipitation 0.1 10 < th dose independent rect. 16 5
552 32.95 precipitation 0.1 10 < th dose dependent rect. 16 5
553 32.97 temperature 10.0 10 > th dose independent rect. 16 5
555 32.97 atmosphere 1010.0 10 < th dose independent rect. 16 5
557 32.97 radiation 30.0 10 < th dose independent rect. 16 5
560 32.97 humidity 50.0 270 > th dose independent rect. 18 21
561 32.98 humidity 90.0 10 < th dose independent rect. 10 6
571 33.05 wind 1.0 10 > th dose independent rect. 16 5
575 33.07 temperature 10.0 270 > th dose dependent rect. 20 17
588 33.13 humidity 90.0 270 < th dose independent rect. 9 4
590 33.15 wind 9.0 10 < th dose independent rect. 21 19
594 33.16 temperature 10.0 270 > th dose dependent rect. 8 6
596 33.17 humidity 50.0 270 > th dose independent rect. 14 18
607 33.21 wind 9.0 270 < th dose independent rect. 9 16
613 33.26 wind 9.0 270 < th dose dependent rect. 8 6
621 33.30 radiation 40.0 10 < th dose dependent rect. 16 5
639 33.33 humidity 50.0 10 > th dose independent rect. 10 6
681 33.43 humidity 90.0 270 < th dose independent rect. 8 6
682 33.43 radiation 20.0 10 < th dose dependent rect. 6 14
690 33.48 wind 9.0 10 < th dose independent rect. 16 5
720 33.54 wind 9.0 270 < th dose independent rect. 1 8
721 33.54 temperature 10.0 270 > th dose independent rect. 1 8
723 33.54 humidity 50.0 270 > th dose independent rect. 1 8
724 33.54 atmosphere 995.0 270 > th dose independent rect. 1 8
725 33.54 atmosphere 1015.0 270 < th dose independent rect. 1 8
726 33.54 temperature 10.0 270 > th dose independent rect. 9 16
755 33.60 temperature 10.0 10 > th dose dependent rect. 21 19
777 33.70 precipitation 0.1 270 < th dose independent rect. 1 8
778 33.70 precipitation 0.1 270 < th dose dependent rect. 1 8
806 33.81 temperature 30.0 270 < th dose independent rect. 1 8
809 33.82 atmosphere 995.0 10 > th dose independent rect. 21 19
812 33.83 wind 1.0 270 > th dose dependent rect. 15 3
827 33.90 radiation 40.0 270 < th dose independent rect. 1 8
840 33.93 radiation 1.0 90 < th dose dependent sin 11 NA
854 33.96 temperature 10.0 270 > th dose dependent rect. 9 4
878 34.05 temperature 10.0 10 > th dose dependent rect. 16 5
921 34.18 wind 9.0 270 < th dose dependent rect. 9 4
922 34.18 radiation 40.0 90 < th dose dependent rect. 15 5
939 34.23 humidity 50.0 10 > th dose independent rect. 16 5
946 34.26 humidity 50.0 270 > th dose independent rect. 14 5
967 34.28 temperature 10.0 1440 > th dose independent rect. 17 5
970 34.28 radiation 30.0 1440 < th dose independent rect. 17 5
988 34.28 temperature 10.0 1440 > th dose independent rect. 22 19