BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0198300 Os03g0198300|AK071995
(607 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0198300 Heat shock protein DnaJ, N-terminal domain con... 1130 0.0
Os12g0548200 Heat shock protein DnaJ, N-terminal domain con... 147 2e-35
Os01g0355500 TolA family protein 145 8e-35
Os05g0579900 Heat shock protein DnaJ, N-terminal domain con... 144 3e-34
Os01g0634300 Heat shock protein DnaJ, N-terminal domain con... 139 5e-33
AK110434 68 2e-11
>Os03g0198300 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 607
Score = 1130 bits (2924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 559/607 (92%), Positives = 559/607 (92%)
Query: 1 MAAAERPSRSDVDFADVFGGPPRRSSGHDSLRRSSMDSSFGSATKGRSGAEERPVFGDRT 60
MAAAERPSRSDVDFADVFGGPPRRSSGHDSLRRSSMDSSFGSATKGRSGAEERPVFGDRT
Sbjct: 1 MAAAERPSRSDVDFADVFGGPPRRSSGHDSLRRSSMDSSFGSATKGRSGAEERPVFGDRT 60
Query: 61 SSDRRRQLGQEFYKDIFAGSESMSPRRGGAAGDLDVFGAQASPGSTSRLHSSFSMKFNGG 120
SSDRRRQLGQEFYKDIFAGSESMSPRRGGAAGDLDVFGAQASPGSTSRLHSSFSMKFNGG
Sbjct: 61 SSDRRRQLGQEFYKDIFAGSESMSPRRGGAAGDLDVFGAQASPGSTSRLHSSFSMKFNGG 120
Query: 121 LDSSVPTSPSRHTSNKNDDGISYAYSVPTSPNSSMNSFLAQGAPQQDSTKNPFSWHRYPF 180
LDSSVPTSPSRHTSNKNDDGISYAYSVPTSPNSSMNSFLAQGAPQQDSTKNPFSWHRYPF
Sbjct: 121 LDSSVPTSPSRHTSNKNDDGISYAYSVPTSPNSSMNSFLAQGAPQQDSTKNPFSWHRYPF 180
Query: 181 LSRFRSNSGDKKDTSHYVSSMDSEYEGTPVSLESSIANNKFHFSFYKWGGKGAVLVLPTT 240
LSRFRSNSGDKKDTSHYVSSMDSEYEGTPVSLESSIANNKFHFSFYKWGGKGAVLVLPTT
Sbjct: 181 LSRFRSNSGDKKDTSHYVSSMDSEYEGTPVSLESSIANNKFHFSFYKWGGKGAVLVLPTT 240
Query: 241 AQENAGDIVGVRSFPQVIVQGMDLIDEEDSTSTATGASKSQTDYEDYKSGKDVSLGALLK 300
AQENAGDIVGVRSFPQVIVQGMDLIDEEDSTSTATGASKSQTDYEDYKSGKDVSLGALLK
Sbjct: 241 AQENAGDIVGVRSFPQVIVQGMDLIDEEDSTSTATGASKSQTDYEDYKSGKDVSLGALLK 300
Query: 301 TKDGALPLAFDDYVLGDKSEESGTKHNTNNAKNNVLGAXXXXXXXXXXXXXXXXXXRVKG 360
TKDGALPLAFDDYVLGDKSEESGTKHNTNNAKNNVLGA RVKG
Sbjct: 301 TKDGALPLAFDDYVLGDKSEESGTKHNTNNAKNNVLGASPSSKSSRSPSGEKSRGSRVKG 360
Query: 361 KVKDFMKIFSPESSPKSKRDRTSSGKNGSKSGPEDKFSISNSEVDDNVRTANMNKQNVFP 420
KVKDFMKIFSPESSPKSKRDRTSSGKNGSKSGPEDKFSISNSEVDDNVRTANMNKQNVFP
Sbjct: 361 KVKDFMKIFSPESSPKSKRDRTSSGKNGSKSGPEDKFSISNSEVDDNVRTANMNKQNVFP 420
Query: 421 PVPSPISEAQDRTEIPVFTVDNEMDSKADFGRKEVTPPSFDESSDAQTKYKVDEITDLAE 480
PVPSPISEAQDRTEIPVFTVDNEMDSKADFGRKEVTPPSFDESSDAQTKYKVDEITDLAE
Sbjct: 421 PVPSPISEAQDRTEIPVFTVDNEMDSKADFGRKEVTPPSFDESSDAQTKYKVDEITDLAE 480
Query: 481 GPXXXXXXXXXXXXXXXFILRNNXXXXXXXXXXXXXXXWSKGKEGNIRSLLSTLQYVLWP 540
GP FILRNN WSKGKEGNIRSLLSTLQYVLWP
Sbjct: 481 GPVEDLEECVVEDVSEDFILRNNEEKEQIKISESKIWEWSKGKEGNIRSLLSTLQYVLWP 540
Query: 541 ESGWKPVPLVDIIEGAAVKKAYQKALLCLHPDKLQQRGAAMHQKYIAEKVFDILQEAWKE 600
ESGWKPVPLVDIIEGAAVKKAYQKALLCLHPDKLQQRGAAMHQKYIAEKVFDILQEAWKE
Sbjct: 541 ESGWKPVPLVDIIEGAAVKKAYQKALLCLHPDKLQQRGAAMHQKYIAEKVFDILQEAWKE 600
Query: 601 FNTVTFG 607
FNTVTFG
Sbjct: 601 FNTVTFG 607
>Os12g0548200 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 925
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 74/85 (87%)
Query: 519 WSKGKEGNIRSLLSTLQYVLWPESGWKPVPLVDIIEGAAVKKAYQKALLCLHPDKLQQRG 578
W+ GKEGN+R+LLSTLQYVLWPE GW+PV L D+I AAVKK Y+KA LC+HPDK+QQ+G
Sbjct: 837 WAAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITAAAVKKVYRKATLCIHPDKVQQKG 896
Query: 579 AAMHQKYIAEKVFDILQEAWKEFNT 603
A + QKY+AEKVFD+L+EAW +FN+
Sbjct: 897 ANLQQKYVAEKVFDLLKEAWNKFNS 921
>Os01g0355500 TolA family protein
Length = 948
Score = 145 bits (366), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 74/85 (87%)
Query: 519 WSKGKEGNIRSLLSTLQYVLWPESGWKPVPLVDIIEGAAVKKAYQKALLCLHPDKLQQRG 578
W+ GKEGN+R+LLSTLQYVLWPE GW+PV L D+I A+VKK Y+KA LC+HPDK+QQ+G
Sbjct: 860 WAAGKEGNLRALLSTLQYVLWPECGWRPVSLTDLITAASVKKEYRKATLCIHPDKVQQKG 919
Query: 579 AAMHQKYIAEKVFDILQEAWKEFNT 603
A + QKYIAEKVFD+L+EAW +FN+
Sbjct: 920 ANLQQKYIAEKVFDLLKEAWNKFNS 944
>Os05g0579900 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 708
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 73/85 (85%)
Query: 519 WSKGKEGNIRSLLSTLQYVLWPESGWKPVPLVDIIEGAAVKKAYQKALLCLHPDKLQQRG 578
WS GKEGN+R+LLSTLQY+L +SGW+PVPL ++I AAVKKAY+KA LC+HPDKLQQRG
Sbjct: 621 WSNGKEGNLRALLSTLQYILGADSGWQPVPLTELITAAAVKKAYRKATLCVHPDKLQQRG 680
Query: 579 AAMHQKYIAEKVFDILQEAWKEFNT 603
A + QKYI EKVFD+L++AW +F +
Sbjct: 681 ATIRQKYICEKVFDLLKDAWNKFTS 705
>Os01g0634300 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 1474
Score = 139 bits (351), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 72/85 (84%)
Query: 519 WSKGKEGNIRSLLSTLQYVLWPESGWKPVPLVDIIEGAAVKKAYQKALLCLHPDKLQQRG 578
WS GKEGN+R+LLSTLQY+L ++GW+ VPL D+I AVKKAY++A LC+HPDKLQQRG
Sbjct: 1387 WSNGKEGNLRALLSTLQYILGSDNGWQSVPLTDLITATAVKKAYRRATLCVHPDKLQQRG 1446
Query: 579 AAMHQKYIAEKVFDILQEAWKEFNT 603
A + QKYI EKVFD+L+EAW +FN+
Sbjct: 1447 ATIRQKYICEKVFDLLKEAWNKFNS 1471
>AK110434
Length = 785
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 519 WSKGKEGNIRSLLSTLQYVLWPESGWKPVPLVDIIEGAAVKKAYQKALLCLHPDK--LQQ 576
+ G + IR+LLS++Q VLWP+SGW + + D+ + + K KA L +HPDK
Sbjct: 693 YKSGVQKGIRTLLSSMQSVLWPDSGWAALSIGDVSDDKKLHKFINKARLLVHPDKQPALD 752
Query: 577 RGAAMHQKYIAEKVFDILQEAWKEFNT 603
RG + YIAE++ + + AW F
Sbjct: 753 RGGTPERLYIAERINEAINTAWAAFQA 779
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.310 0.128 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,407,672
Number of extensions: 891336
Number of successful extensions: 2235
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 2233
Number of HSP's successfully gapped: 6
Length of query: 607
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 500
Effective length of database: 11,448,903
Effective search space: 5724451500
Effective search space used: 5724451500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 159 (65.9 bits)